>KMC000543A_C01 KMC000543A_c01
aaacaaagcatgggaaaatactactcaccaacaacataagggTTTTAGTTCAGAAAAGAA
AGTGGCATTATATTTAGGCAAAATTTCTCAGGTTTACATATAGTATACCTTTTCCAAGCC
ACTCACATAGATGACAGTATACCTATGAATACCTTGTTCTTCGAATAAAGATGCCAACTT
GACCTCATGATAAGCTGCATAATAGCAGCAATCTTCTGGTAAAAAGAATCACGATTGACA
GGGTATACCTTCTCTGCTGATCCAATCTTAACTCCATTTTTTTTTTGCTAAAGGCACATG
ATACCTTTGCTCTGGATCTGCAATCTTCTATCAACCCCATATATTCCATTTGAGGCTAAT
TTCTCCAGAGTGATTGAAATACACATATCATTAACATAATCCGGCGCATAAACATATAGT
TGGCAAACAGGATACTTTATGTCGTCTTCTTCTTCTTCTTCGGCCTCACATATCCAGTAT
CAGACCTTTCTGCTGAGCGTTTGGATTGTTTAGCCTCTAGCAGCATTGATCTTGCGTTAT
GGAAAGGAGCTTCTGAGTTTGAAGCCATCATTT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000543A_C01 KMC000543A_c01
         (573 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB02349.1| gene_id:MIL23.11~ref|NP_006775.1~strong similari...    39  0.046
gb|AAL87290.1| putative WD-repeat protein [Arabidopsis thaliana]       39  0.046
ref|NP_188791.1| G-protein beta family; protein id: At3g21540.1 ...    39  0.046
gb|AAO72694.1| WD repeat protein [Oryza sativa (japonica cultiva...    37  0.13
gb|EAA15969.1| hypothetical protein [Plasmodium yoelii yoelii]         34  1.5

>dbj|BAB02349.1| gene_id:MIL23.11~ref|NP_006775.1~strong similarity to unknown protein
            [Arabidopsis thaliana]
          Length = 955

 Score = 38.9 bits (89), Expect = 0.046
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = -3

Query: 571  MMASNSEAPFHNARSMLLE--AKQSKRSAERSDTGYVRPKKKKK 446
            MM + S+APF +A++ LLE  ++Q+KR A R DT   + +KKK+
Sbjct: 899  MMDARSDAPFKDAKAKLLEIRSQQAKRMASRGDTKMEKKRKKKQ 942

>gb|AAL87290.1| putative WD-repeat protein [Arabidopsis thaliana]
          Length = 252

 Score = 38.9 bits (89), Expect = 0.046
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = -3

Query: 571 MMASNSEAPFHNARSMLLE--AKQSKRSAERSDTGYVRPKKKKK 446
           MM + S+APF +A++ LLE  ++Q+KR A R DT   + +KKK+
Sbjct: 196 MMDARSDAPFKDAKAKLLEIRSQQAKRMASRGDTKMEKKRKKKQ 239

>ref|NP_188791.1| G-protein beta family; protein id: At3g21540.1 [Arabidopsis thaliana]
          Length = 949

 Score = 38.9 bits (89), Expect = 0.046
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = -3

Query: 571  MMASNSEAPFHNARSMLLE--AKQSKRSAERSDTGYVRPKKKKK 446
            MM + S+APF +A++ LLE  ++Q+KR A R DT   + +KKK+
Sbjct: 893  MMDARSDAPFKDAKAKLLEIRSQQAKRMASRGDTKMEKKRKKKQ 936

>gb|AAO72694.1| WD repeat protein [Oryza sativa (japonica cultivar-group)]
          Length = 228

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 18/43 (41%), Positives = 30/43 (68%), Gaps = 1/43 (2%)
 Frame = -3

Query: 571 MMASNSEAPFHNARSMLLEAKQSK-RSAERSDTGYVRPKKKKK 446
           ++A  S+APF +AR+ L+E +Q + R ++RSD    R KKK++
Sbjct: 181 LLAMRSDAPFRDARAKLMEIRQEQSRRSDRSDGAEKRKKKKRR 223

>gb|EAA15969.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 511

 Score = 33.9 bits (76), Expect = 1.5
 Identities = 28/106 (26%), Positives = 49/106 (45%), Gaps = 2/106 (1%)
 Frame = +3

Query: 36  IRVLVQKRKWHYI*AKFLRFTYSIPFPSHSHR*QYTYEYLVLRIKM--PT*PHDKLHNSS 209
           IR L++K+K       F+   Y++  P  S++  Y  ++ +  IK       H KL+N  
Sbjct: 19  IRFLIKKKKQILF---FIYLLYNLKEPYISYKYSYEQKFFIQLIKYCNKINKHFKLNNKY 75

Query: 210 NLLVKRITIDRVYLLC*SNLNSIFFLLKAHDTFALDLQSSINPIYS 347
            +      I+ +      NL   FF+  +  TF  + Q+S+N IY+
Sbjct: 76  RIR----KINHLSFFSLINLYKTFFITLSDSTFHSNFQTSLNTIYA 117

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,944,415
Number of Sequences: 1393205
Number of extensions: 10040888
Number of successful extensions: 19720
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19698
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MPDL028a12_f AV777884 1 211 2 SPDL088h12_f BP057560 17 586 3 SPDL018e05_f BP053134 44 544 4 SPDL067d11_f BP056162 47 553 5 MPDL006f10_f AV776833 47 355 6 GENLf022e03 BP063509 47 505 7 MRL014b02_f BP084414 47 422 8 GENLf031c04 BP063964 47 522 9 GENLf053g12 BP065198 47 505 10 MRL015c05_f BP084471 51 420 11 SPDL058d04_f BP055628 52 401 12 SPDL048c05_f BP054998 53 481 13 MPDL008a10_f AV776898 93 453

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