Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000541A_C02 KMC000541A_c02
(931 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN87883.1| FEG protein [Arabidopsis thaliana] 67 4e-10
ref|NP_178282.1| putative cleavage and polyadenylation specifity... 67 4e-10
ref|NP_701388.1| hypothetical protein [Plasmodium falciparum 3D7... 33 8.1
>gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 67.0 bits (162), Expect = 4e-10
Identities = 37/90 (41%), Positives = 52/90 (57%)
Frame = -3
Query: 914 ELQVKNCLNPNFKFQKCSSVDECDSTLTEKNLMPELQVKDERVAEGVLVMEKTKKAKIVH 735
++ +K+C NPNFKF + +L+V D R A+GVLV+EK+KKAKIVH
Sbjct: 458 DMFLKSCSNPNFKFSNST----------------QLRVTDHRTADGVLVIEKSKKAKIVH 501
Query: 734 QDELLLMLGEKKQGV*FAYGCPLHIDRSME 645
QDE+ +L EK V A+ CP+ + E
Sbjct: 502 QDEISEVLHEKNHVVSLAHCCPVKVKGESE 531
>ref|NP_178282.1| putative cleavage and polyadenylation specifity factor; protein id:
At2g01730.1 [Arabidopsis thaliana]
gi|25410926|pir||D84428 hypothetical protein At2g01730
[imported] - Arabidopsis thaliana
gi|4220489|gb|AAD12712.1| putative cleavage and
polyadenylation specifity factor [Arabidopsis thaliana]
Length = 837
Score = 67.0 bits (162), Expect = 4e-10
Identities = 37/90 (41%), Positives = 52/90 (57%)
Frame = -3
Query: 914 ELQVKNCLNPNFKFQKCSSVDECDSTLTEKNLMPELQVKDERVAEGVLVMEKTKKAKIVH 735
++ +K+C NPNFKF + +L+V D R A+GVLV+EK+KKAKIVH
Sbjct: 458 DMFLKSCSNPNFKFSNST----------------QLRVTDHRTADGVLVIEKSKKAKIVH 501
Query: 734 QDELLLMLGEKKQGV*FAYGCPLHIDRSME 645
QDE+ +L EK V A+ CP+ + E
Sbjct: 502 QDEISEVLHEKNHVVSLAHCCPVKVKGESE 531
>ref|NP_701388.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496554|gb|AAN36112.1|AE014844_23 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 5729
Score = 32.7 bits (73), Expect = 8.1
Identities = 15/47 (31%), Positives = 27/47 (56%), Gaps = 6/47 (12%)
Frame = +3
Query: 714 HEQKFILVNNLCLFCFLHN------QNSFCYSFIFNLKFRH*VFFCQ 836
H+++F+ L F ++HN +N+F SF+F+L F H + C+
Sbjct: 5054 HKEQFLKTLILDFFIYVHNIYKQKLKNNFINSFLFSLSFFHTILICR 5100
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 739,041,993
Number of Sequences: 1393205
Number of extensions: 15547784
Number of successful extensions: 31124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31109
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 51582455952
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
