Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000539A_C01 KMC000539A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_497967.1| F-box domain containing protein [Caenorhabditis... 39 0.051
ref|NP_149401.1| ymf71 [Tetrahymena thermophila] gi|15011503|gb|... 37 0.19
ref|NP_704959.1| hypothetical protein [Plasmodium falciparum 3D7... 30 0.31
ref|NP_704287.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.33
ref|NP_701786.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.33
>ref|NP_497967.1| F-box domain containing protein [Caenorhabditis elegans]
gi|7507050|pir||T24435 hypothetical protein T04A8.13 -
Caenorhabditis elegans gi|5824592|emb|CAA84732.2|
Hypothetical protein T04A8.13 [Caenorhabditis elegans]
Length = 791
Score = 38.5 bits (88), Expect = 0.051
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Frame = +1
Query: 109 KEQRRSFTGDEKTA*QRSKPEKEKKKKKTATSAIKYYPARRTWSQMGLINQSSMPTAGCT 288
K++++ DEK ++++ +KEK+K+KT +K P + S + I + T
Sbjct: 141 KKEKKEEKKDEKEKKEKTEDDKEKEKEKTKEEKVKEDPKKDDKSGVDTIKKEGSTAPAST 200
Query: 289 ALKSINLPP*HNHTLQKQPAREPTSTSN--------YKFSSSPLS--LRFFRSTHKGSDF 438
AL PP + P R P N ++ +S P+S LR H F
Sbjct: 201 ALVP---PPPRQNIPPPTPRRPPPKKKNACCVDISTFQETSFPVSVLLRIRFPWHFAILF 257
Query: 439 RSSTSSPASLXFSFFF 486
S S + F FFF
Sbjct: 258 LFSFSPHSKSMFFFFF 273
>ref|NP_149401.1| ymf71 [Tetrahymena thermophila]
gi|15011503|gb|AAK77598.1|AF396436_38 ymf71 [Tetrahymena
thermophila]
Length = 101
Score = 36.6 bits (83), Expect = 0.19
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 187 FFFFLFLVWIFATLFSRPL*NFFSVLYWPLGLYISFFWQLTLLVLLIYIHLAYIN 23
F+ LF +W + + + LY + L I FFW + +L +YI++ YIN
Sbjct: 38 FYILLFFIWYYYSSSKLKILKINIKLYLFIFLLIFFFWSINFNLLNLYIYIDYIN 92
>ref|NP_704959.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615204|emb|CAD52194.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1341
Score = 29.6 bits (65), Expect(2) = 0.31
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 171 KRKKKKKNCYISNKILSSEKNMVSDGFNQSIFYAHRRVHRVKINQSSSITQPHPSKTACK 350
K+KKKK+ C + NKI++ +K +++ + + + N+++ PH K K
Sbjct: 129 KKKKKKEKCTLLNKIINKDKININETKKNILLSS-----PINNNKNNDYLSPHDKKDQIK 183
Score = 25.0 bits (53), Expect(2) = 0.31
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 71 LPKERNVQTQGPIKNREEVLQGTRKQRSKDPNQKKKKKKK 190
L K N++ +KN +++ P +KKKKK+K
Sbjct: 97 LLKHDNIKLSSTLKNIKDITHMNDSFPINPPGKKKKKKEK 136
>ref|NP_704287.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499026|emb|CAD51106.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 777
Score = 35.8 bits (81), Expect = 0.33
Identities = 24/83 (28%), Positives = 37/83 (43%), Gaps = 4/83 (4%)
Frame = +3
Query: 144 NSVAKIQTRKRKKKKKNCYISNKILSSEKNMVSDGFNQSIFYAHRRVHRVKINQSS---- 311
N K + +K+KKKKKNCY +N+++ + S Y + + K N +
Sbjct: 454 NDKEKKKKKKKKKKKKNCYEDMFHFKHHQNILNKKYTSSYEYTKNKTKQNKENMINKNVK 513
Query: 312 SITQPHPSKTACKRANQH*QLQI 380
SI+Q + A QH QI
Sbjct: 514 SISQKKENNIQSVEATQHNLQQI 536
>ref|NP_701786.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496959|gb|AAN36510.1|AE014851_29 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1335
Score = 35.8 bits (81), Expect = 0.33
Identities = 24/74 (32%), Positives = 38/74 (50%), Gaps = 9/74 (12%)
Frame = +2
Query: 20 FINVSQMYIYE*--HKKCQLPKE-------RNVQTQGPIKNREEVLQGTRKQRSKDPNQK 172
+IN + Y Y +KC K +N++T+ K ++E + G K++ K+
Sbjct: 658 YINEKKNYFYNNTFKEKCSFGKNCNMIFQNKNIETENTNKKQDENIGGEVKKKKKE---- 713
Query: 173 KKKKKKKLLHQQ*N 214
KKKKKKKL H + N
Sbjct: 714 KKKKKKKLEHNKLN 727
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,483,428
Number of Sequences: 1393205
Number of extensions: 10209705
Number of successful extensions: 54348
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 38400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48374
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
