Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000538A_C01 KMC000538A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86271 protein F16A14.7 [imported] - Arabidopsis thaliana g... 51 1e-05
dbj|BAC42014.1| unknown protein [Arabidopsis thaliana] 51 1e-05
ref|NP_172839.1| hypothetical protein; protein id: At1g13860.1 [... 51 1e-05
pir||A84449 hypothetical protein At2g03480 [imported] - Arabidop... 50 3e-05
gb|AAA93094.1| UNC-13 33 2.4
>pir||G86271 protein F16A14.7 [imported] - Arabidopsis thaliana
gi|8778408|gb|AAF79416.1|AC068197_26 F16A14.7
[Arabidopsis thaliana]
Length = 724
Score = 50.8 bits (120), Expect = 1e-05
Identities = 27/63 (42%), Positives = 43/63 (67%)
Frame = -1
Query: 224 KPPLSWLIMSLITLLALVALLRSSSSSSSSDDIDSAAPRRPASLIYTNYRRIKERAAVDY 45
+P +S L+ + ++AL+ +L +S SSS+ ++ R P S IY+NY R+KE+AAVDY
Sbjct: 10 RPRISGLLFLTLGVIALITILVPNSDSSST----TSTTRVPPSNIYSNYGRVKEQAAVDY 65
Query: 44 LEL 36
L+L
Sbjct: 66 LDL 68
>dbj|BAC42014.1| unknown protein [Arabidopsis thaliana]
Length = 603
Score = 50.8 bits (120), Expect = 1e-05
Identities = 27/63 (42%), Positives = 43/63 (67%)
Frame = -1
Query: 224 KPPLSWLIMSLITLLALVALLRSSSSSSSSDDIDSAAPRRPASLIYTNYRRIKERAAVDY 45
+P +S L+ + ++AL+ +L +S SSS+ ++ R P S IY+NY R+KE+AAVDY
Sbjct: 10 RPRISGLLFLTLGVIALITILVPNSDSSST----TSTTRVPPSNIYSNYGRVKEQAAVDY 65
Query: 44 LEL 36
L+L
Sbjct: 66 LDL 68
>ref|NP_172839.1| hypothetical protein; protein id: At1g13860.1 [Arabidopsis
thaliana]
Length = 603
Score = 50.8 bits (120), Expect = 1e-05
Identities = 27/63 (42%), Positives = 43/63 (67%)
Frame = -1
Query: 224 KPPLSWLIMSLITLLALVALLRSSSSSSSSDDIDSAAPRRPASLIYTNYRRIKERAAVDY 45
+P +S L+ + ++AL+ +L +S SSS+ ++ R P S IY+NY R+KE+AAVDY
Sbjct: 10 RPRISGLLFLTLGVIALITILVPNSDSSST----TSTTRVPPSNIYSNYGRVKEQAAVDY 65
Query: 44 LEL 36
L+L
Sbjct: 66 LDL 68
>pir||A84449 hypothetical protein At2g03480 [imported] - Arabidopsis thaliana
Length = 619
Score = 49.7 bits (117), Expect = 3e-05
Identities = 29/75 (38%), Positives = 46/75 (60%), Gaps = 3/75 (4%)
Frame = -1
Query: 251 SWFNKTTSP---KPPLSWLIMSLITLLALVALLRSSSSSSSSDDIDSAAPRRPASLIYTN 81
SW+ +S +P + L+ ++ ++ALV +L +S+S DS++ IY+N
Sbjct: 4 SWYKSVSSVFGLRPRIRGLLFFIVGVVALVTILAPLTSNS----YDSSSSSTLVPNIYSN 59
Query: 80 YRRIKERAAVDYLEL 36
YRRIKE+AAVDYL+L
Sbjct: 60 YRRIKEQAAVDYLDL 74
>gb|AAA93094.1| UNC-13
Length = 1815
Score = 33.5 bits (75), Expect = 2.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 623 HHSSSSPSSIFTIEKSLSLDHHQIHQNPSSPLPNRFLDPNR*NQ 492
+HS S S +T + S+ ++HHQ+H N S+ L P+R Q
Sbjct: 184 NHSGLSEDSDYTSDVSVPVNHHQLHPNSSAHQYESHLHPHRTRQ 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,097,364
Number of Sequences: 1393205
Number of extensions: 12282181
Number of successful extensions: 49165
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 42566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48125
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
