Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000535A_C01 KMC000535A_c01
(728 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28144331 TPA: PDR15 ABC transporter [Arabidopsis thaliana] 169 2e-70
ref|NP_680694.1| similar to ABC transporter family protein; prot... 169 2e-70
gi|28144333 TPA: PDR14 ABC transporter [Arabidopsis thaliana] 169 2e-68
ref|NP_190916.1| ABC transporter family protein; protein id: At3... 158 8e-65
gi|28144349 TPA: PDR13 ABC transporter [Arabidopsis thaliana] 155 3e-63
>gi|28144331 TPA: PDR15 ABC transporter [Arabidopsis thaliana]
Length = 1390
Score = 169 bits (429), Expect(2) = 2e-70
Identities = 74/124 (59%), Positives = 96/124 (76%)
Frame = -1
Query: 503 GMFIVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLT 324
GM +V VTPNV +A L SSFY I+NLF+GY MP+P +P+WW+WMYYL P SW +NG+LT
Sbjct: 1267 GMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLT 1326
Query: 323 SQYGDINKNMSVFEDVKTVATFLEDYYGFRYDFLGVTAVVLIVFPIVFAALFAYCIGNLN 144
SQYGD+ K + F + K V+ FLEDY+G+RYD L + AVVLI FPI+ A+LFA+ IG LN
Sbjct: 1327 SQYGDMEKEILAFGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLN 1386
Query: 143 FPRR 132
F ++
Sbjct: 1387 FQKK 1390
Score = 118 bits (296), Expect(2) = 2e-70
Identities = 49/73 (67%), Positives = 62/73 (84%)
Frame = -3
Query: 726 ATERTVLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGHYWSAYKIFWS 547
ATER V YRERF+ MY+PWAYS AQVL+E+PYS Q+ +YVII YPM+G++WS YK+FWS
Sbjct: 1193 ATERNVFYRERFSRMYNPWAYSLAQVLVEIPYSLFQSIIYVIIVYPMVGYHWSVYKVFWS 1252
Query: 546 FFSMFSSILNFNY 508
F+S+F S+L FNY
Sbjct: 1253 FYSIFCSLLIFNY 1265
Score = 43.5 bits (101), Expect(2) = 1e-08
Identities = 18/60 (30%), Positives = 37/60 (61%)
Frame = -1
Query: 494 IVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLTSQY 315
I +V + +A+ + S +L++F G+ + +P MP W W ++L PLS+A G+ ++++
Sbjct: 642 IGAVFRDFDVATTIGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIGLTSNEF 701
Score = 37.7 bits (86), Expect(2) = 1e-08
Identities = 13/45 (28%), Positives = 29/45 (63%)
Frame = -3
Query: 711 VLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGH 577
V +++ Y WAY+ ++++P SF+++ L+ ++TY +IG+
Sbjct: 570 VFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYYVIGY 614
>ref|NP_680694.1| similar to ABC transporter family protein; protein id: At4g15236.1
[Arabidopsis thaliana]
Length = 1388
Score = 169 bits (429), Expect(2) = 2e-70
Identities = 74/124 (59%), Positives = 96/124 (76%)
Frame = -1
Query: 503 GMFIVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLT 324
GM +V VTPNV +A L SSFY I+NLF+GY MP+P +P+WW+WMYYL P SW +NG+LT
Sbjct: 1265 GMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLT 1324
Query: 323 SQYGDINKNMSVFEDVKTVATFLEDYYGFRYDFLGVTAVVLIVFPIVFAALFAYCIGNLN 144
SQYGD+ K + F + K V+ FLEDY+G+RYD L + AVVLI FPI+ A+LFA+ IG LN
Sbjct: 1325 SQYGDMEKEILAFGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLN 1384
Query: 143 FPRR 132
F ++
Sbjct: 1385 FQKK 1388
Score = 118 bits (296), Expect(2) = 2e-70
Identities = 49/73 (67%), Positives = 62/73 (84%)
Frame = -3
Query: 726 ATERTVLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGHYWSAYKIFWS 547
ATER V YRERF+ MY+PWAYS AQVL+E+PYS Q+ +YVII YPM+G++WS YK+FWS
Sbjct: 1191 ATERNVFYRERFSRMYNPWAYSLAQVLVEIPYSLFQSIIYVIIVYPMVGYHWSVYKVFWS 1250
Query: 546 FFSMFSSILNFNY 508
F+S+F S+L FNY
Sbjct: 1251 FYSIFCSLLIFNY 1263
Score = 43.5 bits (101), Expect(2) = 1e-08
Identities = 18/60 (30%), Positives = 37/60 (61%)
Frame = -1
Query: 494 IVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLTSQY 315
I +V + +A+ + S +L++F G+ + +P MP W W ++L PLS+A G+ ++++
Sbjct: 640 IGAVFRDFDVATTIGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIGLTSNEF 699
Score = 37.7 bits (86), Expect(2) = 1e-08
Identities = 13/45 (28%), Positives = 29/45 (63%)
Frame = -3
Query: 711 VLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGH 577
V +++ Y WAY+ ++++P SF+++ L+ ++TY +IG+
Sbjct: 568 VFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYYVIGY 612
>gi|28144333 TPA: PDR14 ABC transporter [Arabidopsis thaliana]
Length = 1392
Score = 169 bits (428), Expect(2) = 2e-68
Identities = 74/124 (59%), Positives = 96/124 (76%)
Frame = -1
Query: 503 GMFIVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLT 324
GM +V VTPNV +A L SSFY I+NLF+GY MP+P +P+WW+WMYYL P SW +NG+LT
Sbjct: 1269 GMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLT 1328
Query: 323 SQYGDINKNMSVFEDVKTVATFLEDYYGFRYDFLGVTAVVLIVFPIVFAALFAYCIGNLN 144
SQYGD+ K + F + K V+ FLEDY+G+RYD L + AVVLI FPI+ A+LFA+ IG LN
Sbjct: 1329 SQYGDMEKEILAFGEKKKVSDFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLN 1388
Query: 143 FPRR 132
F ++
Sbjct: 1389 FQKK 1392
Score = 112 bits (280), Expect(2) = 2e-68
Identities = 46/73 (63%), Positives = 61/73 (83%)
Frame = -3
Query: 726 ATERTVLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGHYWSAYKIFWS 547
ATER V YRERF+ MY+ WAYS AQVL+E+PYS Q+ +YVII YPM+G++WS +K+FWS
Sbjct: 1195 ATERNVFYRERFSRMYNSWAYSLAQVLVEIPYSLFQSIVYVIIVYPMVGYHWSVFKVFWS 1254
Query: 546 FFSMFSSILNFNY 508
F+S+F ++L FNY
Sbjct: 1255 FYSIFCTLLIFNY 1267
Score = 43.1 bits (100), Expect(2) = 9e-09
Identities = 18/60 (30%), Positives = 36/60 (60%)
Frame = -1
Query: 494 IVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLTSQY 315
I +V + +A+ + S +L++F G+ + +P MP W W ++L PLS+A G+ +++
Sbjct: 644 IAAVFRDFVVATTVGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIGLTANEF 703
Score = 38.5 bits (88), Expect(2) = 9e-09
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = -3
Query: 711 VLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGHYWSAYKIFWSFFSMF 532
V +++ Y WAY+ ++++P SF+++ L+ ++TY +IG+ + F +F
Sbjct: 572 VFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYYVIGYSPEMGRFIRQFLILF 631
Query: 531 S 529
+
Sbjct: 632 A 632
>ref|NP_190916.1| ABC transporter family protein; protein id: At3g53480.1 [Arabidopsis
thaliana] gi|11346289|pir||T45888 ABC transporter-like
protein - Arabidopsis thaliana gi|6729499|emb|CAB67655.1|
ABC transporter-like protein [Arabidopsis thaliana]
gi|28144337|tpg|DAA00877.1| TPA: PDR9 ABC transporter
[Arabidopsis thaliana]
Length = 1450
Score = 158 bits (400), Expect(2) = 8e-65
Identities = 69/123 (56%), Positives = 93/123 (75%)
Frame = -1
Query: 500 MFIVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLTS 321
MF+VS+TPN +A+IL S FY NLFSG+ +P+ Q+P WW+W+YYL P SW +NG ++S
Sbjct: 1328 MFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISS 1387
Query: 320 QYGDINKNMSVFEDVKTVATFLEDYYGFRYDFLGVTAVVLIVFPIVFAALFAYCIGNLNF 141
QYGDI++ ++VF TVA FL+DY+GF +D L VTAVV I FPI A++FA+ +G LNF
Sbjct: 1388 QYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNF 1447
Query: 140 PRR 132
RR
Sbjct: 1448 QRR 1450
Score = 111 bits (277), Expect(2) = 8e-65
Identities = 51/73 (69%), Positives = 60/73 (81%)
Frame = -3
Query: 723 TERTVLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGHYWSAYKIFWSF 544
TER V+YRERFAGMYS AY+ QV+ E+PY FIQAA +VI+TYPMIG Y SAYK+FWS
Sbjct: 1254 TERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSL 1313
Query: 543 FSMFSSILNFNYL 505
+SMF S+L FNYL
Sbjct: 1314 YSMFCSLLTFNYL 1326
Score = 45.4 bits (106), Expect = 8e-04
Identities = 31/115 (26%), Positives = 53/115 (45%), Gaps = 5/115 (4%)
Frame = -1
Query: 467 LASILCSSFYTILN-LFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLTSQYGDINKNMS 291
+ASI SF + +F+G+ +P P MP W W ++ PLS+ G+ +++ N
Sbjct: 686 VASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQM 745
Query: 290 VFEDVKTVATFLE----DYYGFRYDFLGVTAVVLIVFPIVFAALFAYCIGNLNFP 138
+ T L+ DY G+ Y V+ L+ F ++F +F + L P
Sbjct: 746 QPNNFTLGRTILQTRGMDYNGYMY---WVSLCALLGFTVLFNIIFTLALTFLKSP 797
Score = 45.1 bits (105), Expect = 0.001
Identities = 27/104 (25%), Positives = 52/104 (49%), Gaps = 7/104 (6%)
Frame = -3
Query: 726 ATERTVLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGHYWSAYKIFWS 547
A V Y+++ Y WAY+ +++VP SF ++ ++ ++Y +IG+ A + F
Sbjct: 601 AQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQ 660
Query: 546 FFSMFSSILNFNYLRNVHC----FRDTQCSI---GFYIVFIFLY 436
F +F+ ++F + C F+ SI F I+F F++
Sbjct: 661 FILLFA--VHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVF 702
>gi|28144349 TPA: PDR13 ABC transporter [Arabidopsis thaliana]
Length = 1397
Score = 155 bits (393), Expect(2) = 3e-63
Identities = 63/124 (50%), Positives = 98/124 (78%)
Frame = -1
Query: 503 GMFIVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLT 324
GM +V++TPN+ +A L S+F++++NLF+G+ MP+ ++PKWW+WMYYL P SW + G+L+
Sbjct: 1274 GMLMVALTPNIHMALTLRSTFFSMVNLFAGFVMPKQKIPKWWIWMYYLSPTSWVLEGLLS 1333
Query: 323 SQYGDINKNMSVFEDVKTVATFLEDYYGFRYDFLGVTAVVLIVFPIVFAALFAYCIGNLN 144
SQYGD+ K ++VF + K+V+ FLEDY+G+++D L V A VLI FPI+ A+LFA+ + LN
Sbjct: 1334 SQYGDVEKEITVFGEKKSVSAFLEDYFGYKHDSLAVVAFVLIAFPIIVASLFAFFMSKLN 1393
Query: 143 FPRR 132
F ++
Sbjct: 1394 FQKK 1397
Score = 108 bits (270), Expect(2) = 3e-63
Identities = 49/73 (67%), Positives = 59/73 (80%)
Frame = -3
Query: 726 ATERTVLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGHYWSAYKIFWS 547
ATER V YRERFA MYS WAYSF+QVL+EVPYS +Q+ L II YPMIG++ S YK+FWS
Sbjct: 1200 ATERNVFYRERFARMYSSWAYSFSQVLVEVPYSLLQSLLCTIIVYPMIGYHMSVYKMFWS 1259
Query: 546 FFSMFSSILNFNY 508
+S+F S+L FNY
Sbjct: 1260 LYSIFCSLLIFNY 1272
Score = 42.0 bits (97), Expect = 0.009
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Frame = -1
Query: 494 IVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLTSQY 315
I S+ SI + +L LF G+ +P+ MP W W ++L PLS+A G+ +++
Sbjct: 642 IASICRTFVACSITGAISVLLLALFGGFVIPKSSMPTWLGWGFWLSPLSYAEIGLTANEF 701
Query: 314 ----------GDINKNMSVFEDVKTVATFLEDYYGFRYDFLGVTAVVLIVFPIVFAALFA 165
G+I V DV+ + Y+ L+ F + F AL+
Sbjct: 702 FSPRWRKLTSGNITAGEQVL-DVRGLNFGRHSYW--------TAFGALVGFVLFFNALYT 752
Query: 164 YCIGNLNFPRR 132
+ N P+R
Sbjct: 753 LALTYRNNPQR 763
Score = 36.6 bits (83), Expect = 0.37
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = -3
Query: 711 VLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGHYWSAYKIFWSFFSM- 535
V +++ Y WAY+ +++ +P S + + ++ ++TY +IG+ + F F +
Sbjct: 570 VFCKQKDLYFYPAWAYAIPSIILRIPLSVLDSFIWTVLTYYVIGYSPEVGRFFRHFIILL 629
Query: 534 ---FSSILNFNYLRNVHCFRDTQCSI 466
S I F + ++ C CSI
Sbjct: 630 TFHLSCISMFRAIASI-CRTFVACSI 654
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,808,947
Number of Sequences: 1393205
Number of extensions: 14025208
Number of successful extensions: 35349
Number of sequences better than 10.0: 280
Number of HSP's better than 10.0 without gapping: 32747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35107
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
