Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000532A_C01 KMC000532A_c01
(755 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180403.1| hypothetical protein; protein id: At2g28360.1 [... 123 2e-27
gb|AAM97083.1| unknown protein [Arabidopsis thaliana] gi|2805949... 123 2e-27
ref|NP_190105.1| putative protein; protein id: At3g45190.1 [Arab... 109 4e-23
pir||A86215 protein T6D22.8 [imported] - Arabidopsis thaliana gi... 105 7e-22
ref|NP_172277.1| unknown protein; protein id: At1g07990.1 [Arabi... 105 7e-22
>ref|NP_180403.1| hypothetical protein; protein id: At2g28360.1 [Arabidopsis thaliana]
gi|25370578|pir||H84683 hypothetical protein At2g28360
[imported] - Arabidopsis thaliana
gi|4432841|gb|AAD20690.1| hypothetical protein
[Arabidopsis thaliana]
Length = 826
Score = 123 bits (309), Expect = 2e-27
Identities = 67/103 (65%), Positives = 76/103 (73%)
Frame = -3
Query: 750 VSSNGLPATEDSLDGGGDSSXRSVVVPSLFEEDVEFVGVELDGAEKAMDQALKEGIVGEA 571
V N P + +S G S S V +LFEEDVEFVGVE +G EKAMDQALKEGIVGEA
Sbjct: 726 VIPNSSPTSSES-SSLGHKSPSSPAVRALFEEDVEFVGVEPEGTEKAMDQALKEGIVGEA 784
Query: 570 GPLKRNLVPELPEKENSDEASPGVKEFNDANYWRIDQEVAVLE 442
GPLKRN+V ++PE EN E S GV EFNDAN+WR+DQEV VLE
Sbjct: 785 GPLKRNIVQKVPENENQAENS-GVTEFNDANFWRVDQEVTVLE 826
>gb|AAM97083.1| unknown protein [Arabidopsis thaliana] gi|28059493|gb|AAO30063.1|
unknown protein [Arabidopsis thaliana]
Length = 503
Score = 123 bits (309), Expect = 2e-27
Identities = 67/103 (65%), Positives = 76/103 (73%)
Frame = -3
Query: 750 VSSNGLPATEDSLDGGGDSSXRSVVVPSLFEEDVEFVGVELDGAEKAMDQALKEGIVGEA 571
V N P + +S G S S V +LFEEDVEFVGVE +G EKAMDQALKEGIVGEA
Sbjct: 403 VIPNSSPTSSES-SSLGHKSPSSPAVRALFEEDVEFVGVEPEGTEKAMDQALKEGIVGEA 461
Query: 570 GPLKRNLVPELPEKENSDEASPGVKEFNDANYWRIDQEVAVLE 442
GPLKRN+V ++PE EN E S GV EFNDAN+WR+DQEV VLE
Sbjct: 462 GPLKRNIVQKVPENENQAENS-GVTEFNDANFWRVDQEVTVLE 503
>ref|NP_190105.1| putative protein; protein id: At3g45190.1 [Arabidopsis thaliana]
gi|11358005|pir||T47459 hypothetical protein T14D3.130 -
Arabidopsis thaliana gi|6911857|emb|CAB72157.1| putative
protein [Arabidopsis thaliana]
Length = 774
Score = 109 bits (273), Expect = 4e-23
Identities = 54/87 (62%), Positives = 68/87 (78%)
Frame = -3
Query: 702 GDSSXRSVVVPSLFEEDVEFVGVELDGAEKAMDQALKEGIVGEAGPLKRNLVPELPEKEN 523
G+ S RS VPSLF +DVEFVGVE +G E+AMDQALKEGIVGEAGP+KRN P KE+
Sbjct: 691 GEISPRSPPVPSLFGKDVEFVGVEPEGTERAMDQALKEGIVGEAGPMKRNTTTASPGKES 750
Query: 522 SDEASPGVKEFNDANYWRIDQEVAVLE 442
D++ ++E+ND NYW++DQEV V+E
Sbjct: 751 PDDS---MQEYNDTNYWKVDQEVTVVE 774
>pir||A86215 protein T6D22.8 [imported] - Arabidopsis thaliana
gi|8778825|gb|AAF79824.1|AC026875_4 T6D22.8 [Arabidopsis
thaliana]
Length = 990
Score = 105 bits (262), Expect = 7e-22
Identities = 52/76 (68%), Positives = 63/76 (82%)
Frame = -3
Query: 669 SLFEEDVEFVGVELDGAEKAMDQALKEGIVGEAGPLKRNLVPELPEKENSDEASPGVKEF 490
SLFE+DVEFVGVE +GAEKAM+QA+KEGIVGEAG +K+N E+ E +E+S GVKEF
Sbjct: 917 SLFEKDVEFVGVEPEGAEKAMEQAMKEGIVGEAGVMKKN--KEMAEDSKPEESSGGVKEF 974
Query: 489 NDANYWRIDQEVAVLE 442
ND NYW++DQEV VLE
Sbjct: 975 NDNNYWKVDQEVGVLE 990
>ref|NP_172277.1| unknown protein; protein id: At1g07990.1 [Arabidopsis thaliana]
Length = 882
Score = 105 bits (262), Expect = 7e-22
Identities = 52/76 (68%), Positives = 63/76 (82%)
Frame = -3
Query: 669 SLFEEDVEFVGVELDGAEKAMDQALKEGIVGEAGPLKRNLVPELPEKENSDEASPGVKEF 490
SLFE+DVEFVGVE +GAEKAM+QA+KEGIVGEAG +K+N E+ E +E+S GVKEF
Sbjct: 809 SLFEKDVEFVGVEPEGAEKAMEQAMKEGIVGEAGVMKKN--KEMAEDSKPEESSGGVKEF 866
Query: 489 NDANYWRIDQEVAVLE 442
ND NYW++DQEV VLE
Sbjct: 867 NDNNYWKVDQEVGVLE 882
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 649,135,726
Number of Sequences: 1393205
Number of extensions: 14451631
Number of successful extensions: 42772
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 38458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42228
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
