Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000531A_C01 KMC000531A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06390 histone H2B-3 - tomato (fragment) gi|3021485|emb|CAA... 147 2e-58
ref|NP_190184.1| histone H2B; protein id: At3g45980.1, supported... 145 3e-58
ref|NP_200799.1| histone H2B - like protein; protein id: At5g599... 146 3e-58
gb|AAM63259.1| histone H2B-like protein [Arabidopsis thaliana] 144 1e-57
ref|NP_180440.1| putative histone H2B; protein id: At2g28720.1, ... 146 6e-57
>pir||T06390 histone H2B-3 - tomato (fragment) gi|3021485|emb|CAA12231.1|
histone H2B-3 [Lycopersicon esculentum]
Length = 137
Score = 147 bits (371), Expect(2) = 2e-58
Identities = 75/76 (98%), Positives = 76/76 (99%)
Frame = -1
Query: 471 HPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 292
HPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAK
Sbjct: 62 HPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAK 121
Query: 291 HAVSEGTKAVTKFTSS 244
HAVSEGTKAVTKFTSS
Sbjct: 122 HAVSEGTKAVTKFTSS 137
Score = 100 bits (250), Expect(2) = 2e-58
Identities = 57/66 (86%), Positives = 60/66 (90%)
Frame = -2
Query: 668 KPAEKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSVETYKIYIF 489
KPAEKKPAE K+ VAEKAP AEKKPKAGKKLPK+ AAAGDKKKKRSKK+VETYKIYIF
Sbjct: 1 KPAEKKPAE--KTPVAEKAP-AEKKPKAGKKLPKD--AAAGDKKKKRSKKAVETYKIYIF 55
Query: 488 KVLKQV 471
KVLKQV
Sbjct: 56 KVLKQV 61
>ref|NP_190184.1| histone H2B; protein id: At3g45980.1, supported by cDNA: 32930.
[Arabidopsis thaliana] gi|11275242|pir||T47538 histone
H2B - Arabidopsis thaliana gi|2407802|emb|CAA73156.1|
histone H2B [Arabidopsis thaliana]
gi|7339499|emb|CAB82822.1| histone H2B [Arabidopsis
thaliana] gi|21592825|gb|AAM64775.1| histone H2B
[Arabidopsis thaliana]
Length = 150
Score = 145 bits (366), Expect(2) = 3e-58
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = -1
Query: 471 HPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 292
HPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAK
Sbjct: 75 HPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAK 134
Query: 291 HAVSEGTKAVTKFTSS 244
HAVSEGTKAVTKFTSS
Sbjct: 135 HAVSEGTKAVTKFTSS 150
Score = 102 bits (254), Expect(2) = 3e-58
Identities = 58/74 (78%), Positives = 61/74 (82%), Gaps = 3/74 (4%)
Frame = -2
Query: 683 PRHDKKPAEKKPAEEK---KSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSV 513
PR +KKPAEKKPA EK + + AEKAP AEKKPKAGKKLPKE A A GDKKKK KKSV
Sbjct: 3 PRAEKKPAEKKPAAEKPVEEKSKAEKAP-AEKKPKAGKKLPKE-AGAGGDKKKKMKKKSV 60
Query: 512 ETYKIYIFKVLKQV 471
ETYKIYIFKVLKQV
Sbjct: 61 ETYKIYIFKVLKQV 74
>ref|NP_200799.1| histone H2B - like protein; protein id: At5g59910.1, supported by
cDNA: 20822., supported by cDNA: gi_16323078
[Arabidopsis thaliana] gi|27735192|sp|P40283|H2B_ARATH
Histone H2B gi|9757912|dbj|BAB08359.1| contains
similarity to histone H2B~gene_id:MMN10.15 [Arabidopsis
thaliana] gi|16323079|gb|AAL15274.1| AT5g59910/mmn10_130
[Arabidopsis thaliana]
Length = 150
Score = 146 bits (368), Expect(2) = 3e-58
Identities = 74/76 (97%), Positives = 76/76 (99%)
Frame = -1
Query: 471 HPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 292
HPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAK
Sbjct: 75 HPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAK 134
Query: 291 HAVSEGTKAVTKFTSS 244
HAVSEGTKAVTKFTSS
Sbjct: 135 HAVSEGTKAVTKFTSS 150
Score = 101 bits (252), Expect(2) = 3e-58
Identities = 57/74 (77%), Positives = 61/74 (82%), Gaps = 3/74 (4%)
Frame = -2
Query: 683 PRHDKKPAEKKPAEEK---KSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSV 513
P+ +KKPAEKKPA EK + + AEKAP AEKKPKAGKKLPKE A A GDKKKK KKSV
Sbjct: 3 PKAEKKPAEKKPASEKPVEEKSKAEKAP-AEKKPKAGKKLPKE-AGAGGDKKKKMKKKSV 60
Query: 512 ETYKIYIFKVLKQV 471
ETYKIYIFKVLKQV
Sbjct: 61 ETYKIYIFKVLKQV 74
>gb|AAM63259.1| histone H2B-like protein [Arabidopsis thaliana]
Length = 150
Score = 144 bits (362), Expect(2) = 1e-57
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = -1
Query: 471 HPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 292
HPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNK PTITSREIQTAVRLVLPGELAK
Sbjct: 75 HPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKXPTITSREIQTAVRLVLPGELAK 134
Query: 291 HAVSEGTKAVTKFTSS 244
HAVSEGTKAVTKFTSS
Sbjct: 135 HAVSEGTKAVTKFTSS 150
Score = 101 bits (252), Expect(2) = 1e-57
Identities = 57/74 (77%), Positives = 61/74 (82%), Gaps = 3/74 (4%)
Frame = -2
Query: 683 PRHDKKPAEKKPAEEK---KSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSV 513
P+ +KKPAEKKPA EK + + AEKAP AEKKPKAGKKLPKE A A GDKKKK KKSV
Sbjct: 3 PKAEKKPAEKKPASEKPVEEKSKAEKAP-AEKKPKAGKKLPKE-AGAGGDKKKKMKKKSV 60
Query: 512 ETYKIYIFKVLKQV 471
ETYKIYIFKVLKQV
Sbjct: 61 ETYKIYIFKVLKQV 74
>ref|NP_180440.1| putative histone H2B; protein id: At2g28720.1, supported by cDNA:
14965., supported by cDNA: gi_13272408, supported by
cDNA: gi_16209684 [Arabidopsis thaliana]
gi|25294272|pir||D84688 probable histone H2B [imported]
- Arabidopsis thaliana gi|4580384|gb|AAD24363.1|
putative histone H2B [Arabidopsis thaliana]
gi|13272409|gb|AAK17143.1|AF325075_1 putative histone
H2B [Arabidopsis thaliana] gi|16209685|gb|AAL14400.1|
At2g28720/T11P11.3 [Arabidopsis thaliana]
gi|21553526|gb|AAM62619.1| putative histone H2B
[Arabidopsis thaliana] gi|21700841|gb|AAM70544.1|
At2g28720/T11P11.3 [Arabidopsis thaliana]
Length = 151
Score = 146 bits (368), Expect(2) = 6e-57
Identities = 74/76 (97%), Positives = 76/76 (99%)
Frame = -1
Query: 471 HPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 292
HPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAK
Sbjct: 76 HPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAK 135
Query: 291 HAVSEGTKAVTKFTSS 244
HAVSEGTKAVTKFTSS
Sbjct: 136 HAVSEGTKAVTKFTSS 151
Score = 97.4 bits (241), Expect(2) = 6e-57
Identities = 53/74 (71%), Positives = 58/74 (77%), Gaps = 3/74 (4%)
Frame = -2
Query: 683 PRHDKKPAEKKPAEE---KKSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSV 513
P+ KKPAEKKPAE+ ++ VAEKA PAEKKPKAGKKLPKE +KKKKR KKS
Sbjct: 3 PKAGKKPAEKKPAEKAPAEEEKVAEKA-PAEKKPKAGKKLPKEAVTGGVEKKKKRVKKST 61
Query: 512 ETYKIYIFKVLKQV 471
ETYKIYIFKVLKQV
Sbjct: 62 ETYKIYIFKVLKQV 75
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 652,178,375
Number of Sequences: 1393205
Number of extensions: 15724249
Number of successful extensions: 132432
Number of sequences better than 10.0: 1477
Number of HSP's better than 10.0 without gapping: 84634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121275
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
