Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000530A_C01 KMC000530A_c01
(811 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E84847 probable CCCH-type zinc finger protein [imported] - ... 51 2e-05
ref|NP_565962.1| putative CCCH-type zinc finger protein; protein... 51 2e-05
gb|AAO38462.1| unknown protein [Oryza sativa (japonica cultivar-... 45 0.002
>pir||E84847 probable CCCH-type zinc finger protein [imported] - Arabidopsis
thaliana
Length = 727
Score = 51.2 bits (121), Expect = 2e-05
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = -3
Query: 809 LVKESPNETKEKSSTAVSSVAAAGSSGEG-SNMNTPMESV-DHAVLGTWLEQMQLDHLVA 636
LVKE+P E KEK++T+ SSGE P+E V DHA L W+EQMQLD LVA
Sbjct: 673 LVKETPAEAKEKAATS--------SSGEHVMKQPNPVEPVMDHAGLEAWIEQMQLDQLVA 724
Query: 635 QPN 627
Q N
Sbjct: 725 QQN 727
>ref|NP_565962.1| putative CCCH-type zinc finger protein; protein id: At2g41900.1,
supported by cDNA: gi_14335105, supported by cDNA:
gi_20334713 [Arabidopsis thaliana]
gi|14335106|gb|AAK59832.1| At2g41900/T6D20.20
[Arabidopsis thaliana] gi|20198317|gb|AAB63552.2|
putative CCCH-type zinc finger protein [Arabidopsis
thaliana] gi|20334714|gb|AAM16218.1| At2g41900/T6D20.20
[Arabidopsis thaliana]
Length = 716
Score = 51.2 bits (121), Expect = 2e-05
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = -3
Query: 809 LVKESPNETKEKSSTAVSSVAAAGSSGEG-SNMNTPMESV-DHAVLGTWLEQMQLDHLVA 636
LVKE+P E KEK++T+ SSGE P+E V DHA L W+EQMQLD LVA
Sbjct: 662 LVKETPAEAKEKAATS--------SSGEHVMKQPNPVEPVMDHAGLEAWIEQMQLDQLVA 713
Query: 635 QPN 627
Q N
Sbjct: 714 QQN 716
>gb|AAO38462.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 749
Score = 44.7 bits (104), Expect = 0.002
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
Frame = -3
Query: 809 LVKESPNETKEKSSTAVSSVAAAG------SSGEGSNMNTPMESVDH-AVLGTWLEQMQL 651
LVKESP E + ++ +++SV + S+GEG ++N P++ D AV+G LEQMQL
Sbjct: 681 LVKESPPEKQVTTAESINSVGPSPLMPPSVSNGEGPSLNAPLDGHDQAAVIGALLEQMQL 740
Query: 650 D 648
D
Sbjct: 741 D 741
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 689,789,090
Number of Sequences: 1393205
Number of extensions: 15134150
Number of successful extensions: 40092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40074
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41456493416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
