Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000527A_C01 KMC000527A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_145599.1| similar to MrgA4 RF-amide G protein-coupled rec... 35 0.70
gb|AAL68437.1|AF298581_6 Cps6bJ [Streptococcus pneumoniae] 33 2.0
gb|AAL82787.1| putative repeat unit transporter Cps6aJ [Streptoc... 33 2.0
gb|AAK20690.1|AF316640_10 Wzx [Streptococcus pneumoniae] gi|1837... 33 2.0
ref|NP_736218.1| Unknown [Streptococcus agalactiae NEM316] gi|24... 33 2.7
>ref|XP_145599.1| similar to MrgA4 RF-amide G protein-coupled receptor [Mus musculus]
Length = 392
Score = 34.7 bits (78), Expect = 0.70
Identities = 34/116 (29%), Positives = 50/116 (42%), Gaps = 8/116 (6%)
Frame = -2
Query: 334 LYCFCSSFFCYYVSRSNVN------SKFTISDY--FWCWLLYEYSFSPLGFFSLGFSKGV 179
L C +S+FCYY +VN SKF IS Y F +L + + L G K
Sbjct: 228 LICILNSYFCYYSGPKDVNNSVCLVSKFFISTYPMFLFVVLCLSTLTLLARLFCGAGKRK 287
Query: 178 LMRLCIVVFYTKIVQGVAWLIVI*TWALGECILLV*LCHSIYMRRLFS*SIFVINI 11
RL + + T +V + L + W L CI S+ RLF S+ + ++
Sbjct: 288 FTRLFVTIILTILVFLLCGLPLGFYWFLLHCIK---GSFSVLHNRLFQASLVLTSV 340
>gb|AAL68437.1|AF298581_6 Cps6bJ [Streptococcus pneumoniae]
Length = 470
Score = 33.1 bits (74), Expect = 2.0
Identities = 25/93 (26%), Positives = 50/93 (52%), Gaps = 8/93 (8%)
Frame = -2
Query: 265 ISDYFWCWLLYEYSFSPLGFFSLGFSKGVLMR--------LCIVVFYTKIVQGVAWLIVI 110
+++Y + W LY + + +GFF LG+ G+ ++ L FY++I+Q ++LI+I
Sbjct: 37 VTEYSY-WQLYIFYLTYIGFFHLGWIDGIYLKYGGLEYQNLDKKQFYSQILQFFSFLILI 95
Query: 109 *TWALGECILLV*LCHSIYMRRLFS*SIFVINI 11
G +L+V ++ Y+ + S+ V N+
Sbjct: 96 SFLLFGFNLLIVTDPNAKYIYNMTIISMIVTNL 128
>gb|AAL82787.1| putative repeat unit transporter Cps6aJ [Streptococcus pneumoniae]
Length = 470
Score = 33.1 bits (74), Expect = 2.0
Identities = 25/93 (26%), Positives = 50/93 (52%), Gaps = 8/93 (8%)
Frame = -2
Query: 265 ISDYFWCWLLYEYSFSPLGFFSLGFSKGVLMR--------LCIVVFYTKIVQGVAWLIVI 110
+++Y + W LY + + +GFF LG+ G+ ++ L FY++I+Q ++LI+I
Sbjct: 37 VTEYSY-WQLYIFYLTYIGFFHLGWIDGIYLKYGGLEYQNLDKKQFYSQILQFFSFLILI 95
Query: 109 *TWALGECILLV*LCHSIYMRRLFS*SIFVINI 11
G +L+V ++ Y+ + S+ V N+
Sbjct: 96 SFLLFGFNLLIVTDPNAKYIYNMTIISMIVTNL 128
>gb|AAK20690.1|AF316640_10 Wzx [Streptococcus pneumoniae] gi|18376702|gb|AAL68425.1|AF246898_6
putative repeat unit transporter; Cps6aJ [Streptococcus
pneumoniae]
Length = 470
Score = 33.1 bits (74), Expect = 2.0
Identities = 25/93 (26%), Positives = 50/93 (52%), Gaps = 8/93 (8%)
Frame = -2
Query: 265 ISDYFWCWLLYEYSFSPLGFFSLGFSKGVLMR--------LCIVVFYTKIVQGVAWLIVI 110
+++Y + W LY + + +GFF LG+ G+ ++ L FY++I+Q ++LI+I
Sbjct: 37 VTEYSY-WQLYIFYLTYIGFFHLGWIDGIYLKYGGLEYQNLDKKQFYSQILQFFSFLILI 95
Query: 109 *TWALGECILLV*LCHSIYMRRLFS*SIFVINI 11
G +L+V ++ Y+ + S+ V N+
Sbjct: 96 SFLLFGFNLLIVTDPNAKYIYNMTIISMIVTNL 128
>ref|NP_736218.1| Unknown [Streptococcus agalactiae NEM316]
gi|24413364|emb|CAD47443.1| Unknown [Streptococcus
agalactiae NEM316]
Length = 582
Score = 32.7 bits (73), Expect = 2.7
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 268 TISDYFWCWLLYEYSFSPLGFFSLGFSKGVLMRLCIVVF 152
TI WLLY + GFFSL F+ +L+ L I++F
Sbjct: 143 TIFPTIIAWLLYSFIIIATGFFSLWFALMMLLYLAIMIF 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,881,675
Number of Sequences: 1393205
Number of extensions: 9097681
Number of successful extensions: 17799
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17793
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
