Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000526A_C01 KMC000526A_c01
(763 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T28160 hypothetical protein - malaria parasite (Plasmodium ... 33 4.4
ref|NP_704114.1| exported serine/threonine protein kinase [Plasm... 33 5.8
ref|NP_193091.1| putative protein; protein id: At4g13550.1 [Arab... 33 5.8
gb|AAF78035.1|AF245702_1 toll-like receptor 7 [Homo sapiens] 33 5.8
ref|NP_057646.1| toll-like receptor 7 [Homo sapiens] gi|20140876... 33 5.8
>pir||T28160 hypothetical protein - malaria parasite (Plasmodium falciparum)
gi|1658333|gb|AAB54058.1| exported serine/threonine
protein kinase
Length = 2510
Score = 33.1 bits (74), Expect = 4.4
Identities = 29/132 (21%), Positives = 59/132 (43%), Gaps = 8/132 (6%)
Frame = +1
Query: 7 VDQKSNLRNIINNEIIFNNILLNSFSVSFYQGQNIKLSILLTRASISLLGT*PYHLNRIS 186
+ SN +NII+N + NN + N+F+ + + N K L+ + ++ L ++N +S
Sbjct: 471 IPNNSNSKNIISNNVNLNNFVSNNFTSNHMEYNNRKKKNLIASSKVNTLNN--ENMNSLS 528
Query: 187 VNFHTL---GTTQISNQEKHGNKFYKSSTLNCEFVTVNA*DQKRIRH-----VAFLSRVY 342
+ L + I N+ + N + S + + + + K I+H + Y
Sbjct: 529 EKLNPLILSSSHSIHNENQVFNNLHFSEHMQKDNEEIK--NDKVIKHMQEEQIKKTPEAY 586
Query: 343 LLNMICIL*QHQ 378
LLN ++ Q +
Sbjct: 587 LLNNYYLMFQQK 598
>ref|NP_704114.1| exported serine/threonine protein kinase [Plasmodium falciparum
3D7] gi|23498852|emb|CAD50929.1| exported
serine/threonine protein kinase [Plasmodium falciparum
3D7]
Length = 2695
Score = 32.7 bits (73), Expect = 5.8
Identities = 29/132 (21%), Positives = 59/132 (43%), Gaps = 8/132 (6%)
Frame = +1
Query: 7 VDQKSNLRNIINNEIIFNNILLNSFSVSFYQGQNIKLSILLTRASISLLGT*PYHLNRIS 186
+ SN +NII+N + NN + N+F+ + + N K L+ + ++ L ++N +S
Sbjct: 484 IPNNSNSKNIISNNVNLNNFVSNNFTSNHMEYNNRKNKNLIASSKVNTLNN--ENMNSLS 541
Query: 187 VNFHTL---GTTQISNQEKHGNKFYKSSTLNCEFVTVNA*DQKRIRH-----VAFLSRVY 342
+ L + I N+ + N + S + + + + K I+H + Y
Sbjct: 542 EKLNPLILSSSHSIHNENQVFNNLHFSEHMQKDNEEIK--NDKVIKHMQEEQIKKTPEAY 599
Query: 343 LLNMICIL*QHQ 378
LLN ++ Q +
Sbjct: 600 LLNNYYLMFQQK 611
>ref|NP_193091.1| putative protein; protein id: At4g13550.1 [Arabidopsis thaliana]
gi|7487740|pir||T06657 hypothetical protein T6G15.100 -
Arabidopsis thaliana gi|4678381|emb|CAB41113.1| putative
protein [Arabidopsis thaliana]
gi|7268058|emb|CAB78397.1| putative protein [Arabidopsis
thaliana]
Length = 805
Score = 32.7 bits (73), Expect = 5.8
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -1
Query: 763 HMEDFYYVTLLENLRSNYQ 707
HMEDFYY+TLLE+++ Y+
Sbjct: 768 HMEDFYYITLLESVKLYYK 786
>gb|AAF78035.1|AF245702_1 toll-like receptor 7 [Homo sapiens]
Length = 1049
Score = 32.7 bits (73), Expect = 5.8
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = +3
Query: 372 TSISIIPAQMKTKLKLSIFVKYLATCRLKQPTMPFISVCQVIYT--ENTGMAAILLAYVL 545
TS+ Q+ +L + KY +CR K F+SV + Y + ++ + +V
Sbjct: 450 TSVESYEPQVLEQLHYFRYDKYARSCRFKNKEASFMSVNESCYKYGQTLDLSKNSIFFVK 509
Query: 546 TNKDLPVSNLKCITYS*HLSIVYLHGT--QPLARI 644
++ +S LKC+ S +L L+G+ QPLA +
Sbjct: 510 SSDFQHLSFLKCLNLSGNLISQTLNGSEFQPLAEL 544
>ref|NP_057646.1| toll-like receptor 7 [Homo sapiens]
gi|20140876|sp|Q9NYK1|TLR7_HUMAN Toll-like receptor 7
precursor gi|7330281|gb|AAF60188.1|AF240467_1 toll-like
receptor 7 [Homo sapiens] gi|21708075|gb|AAH33651.1|
toll-like receptor 7 [Homo sapiens]
Length = 1049
Score = 32.7 bits (73), Expect = 5.8
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = +3
Query: 372 TSISIIPAQMKTKLKLSIFVKYLATCRLKQPTMPFISVCQVIYT--ENTGMAAILLAYVL 545
TS+ Q+ +L + KY +CR K F+SV + Y + ++ + +V
Sbjct: 450 TSVESYEPQVLEQLHYFRYDKYARSCRFKNKEASFMSVNESCYKYGQTLDLSKNSIFFVK 509
Query: 546 TNKDLPVSNLKCITYS*HLSIVYLHGT--QPLARI 644
++ +S LKC+ S +L L+G+ QPLA +
Sbjct: 510 SSDFQHLSFLKCLNLSGNLISQTLNGSEFQPLAEL 544
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,746,349
Number of Sequences: 1393205
Number of extensions: 12413212
Number of successful extensions: 27613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27580
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
