Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000524A_C01 KMC000524A_c01
(712 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567574.1| kinase-like protein; protein id: At4g19110.1, s... 53 5e-06
ref|NP_568646.1| serine/threonine-protein kinase Mak (male germ ... 42 0.006
gb|AAK96701.1| serine/threonine-protein kinase Mak (male germ ce... 42 0.008
dbj|BAC35389.1| unnamed protein product [Mus musculus] 34 1.8
ref|XP_229013.1| similar to hypothetical protein MGC28284 [Mus m... 34 1.8
>ref|NP_567574.1| kinase-like protein; protein id: At4g19110.1, supported by cDNA:
gi_13430555, supported by cDNA: gi_14532759 [Arabidopsis
thaliana] gi|13430556|gb|AAK25900.1|AF360190_1 putative
kinase [Arabidopsis thaliana] gi|14532760|gb|AAK64081.1|
putative kinase [Arabidopsis thaliana]
Length = 461
Score = 52.8 bits (125), Expect = 5e-06
Identities = 39/87 (44%), Positives = 49/87 (55%), Gaps = 12/87 (13%)
Frame = -3
Query: 710 KESP--TSIKKGRTARG-VSETAEKLXXMSIG---TRRQSLG------QTRPPPMKAGVN 567
K+SP S+ K R R VSETA+KL M+IG +RR S+ Q +PPPMKAG
Sbjct: 378 KKSPPAASLNKNRVTRSSVSETADKLANMTIGATGSRRHSVSVVGQHQQLKPPPMKAG-- 435
Query: 566 WSSGSGDFLLKPAQQIPTGRTLTRKVA 486
W + D L+P Q PT +RKVA
Sbjct: 436 WVGETRDMFLRPTQ--PTTNAYSRKVA 460
>ref|NP_568646.1| serine/threonine-protein kinase Mak (male germ cell-associated
kinase)-like protein; protein id: At5g45430.1, supported
by cDNA: gi_15450859 [Arabidopsis thaliana]
gi|24899765|gb|AAN65097.1| serine/threonine-protein
kinase Mak (male germ cell-associated kinase)-like
protein [Arabidopsis thaliana]
Length = 499
Score = 42.4 bits (98), Expect = 0.006
Identities = 26/63 (41%), Positives = 33/63 (52%)
Frame = -3
Query: 674 ARGVSETAEKLXXMSIGTRRQSLGQTRPPPMKAGVNWSSGSGDFLLKPAQQIPTGRTLTR 495
+RG SETA KL +IG R + + P MKAG W SGD L+P Q +R
Sbjct: 441 SRGASETANKLANATIGGRWTQSQRQQQPAMKAG--WVGESGDMFLRPTQ---PSNPYSR 495
Query: 494 KVA 486
K+A
Sbjct: 496 KIA 498
>gb|AAK96701.1| serine/threonine-protein kinase Mak (male germ cell-associated
kinase)-like protein [Arabidopsis thaliana]
Length = 499
Score = 42.0 bits (97), Expect = 0.008
Identities = 26/63 (41%), Positives = 33/63 (52%)
Frame = -3
Query: 674 ARGVSETAEKLXXMSIGTRRQSLGQTRPPPMKAGVNWSSGSGDFLLKPAQQIPTGRTLTR 495
+RG SETA KL +IG R + + P MKAG W SGD L+P Q +R
Sbjct: 441 SRGASETANKLANETIGGRWTQSQRQQQPAMKAG--WVGESGDMFLRPTQ---PSNPYSR 495
Query: 494 KVA 486
K+A
Sbjct: 496 KIA 498
>dbj|BAC35389.1| unnamed protein product [Mus musculus]
Length = 876
Score = 34.3 bits (77), Expect = 1.8
Identities = 22/54 (40%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Frame = +3
Query: 534 LEQEVSRSRTPIDPSLH--WRRTGLPQGLSSSTNRHXGQLLSCF*NPTCGPPFL 689
L+QE RS P D SLH WR P GL N + G ++ F P GP L
Sbjct: 311 LQQEQFRSAPPADNSLHFLWREIVTPDGLKLYYNPYTGCIIRDF--PHAGPQLL 362
>ref|XP_229013.1| similar to hypothetical protein MGC28284 [Mus musculus] [Rattus
norvegicus]
Length = 369
Score = 34.3 bits (77), Expect = 1.8
Identities = 20/75 (26%), Positives = 30/75 (39%)
Frame = -2
Query: 588 SNEGWGQLEFWIWRLPAQARPTDSNWKNFDEKSCLTRCIC*LWKYFDDQHFERSNTYLPK 409
SN GW L F WR P +PT+ +KN E Y ++ + + P
Sbjct: 194 SNYGWSTLRFLAWRSPHFFQPTNQQFKNMTE-------------YLENMVIKLAKELPPH 240
Query: 408 GMWVRTSPDDFMESN 364
++T D+ E N
Sbjct: 241 SEEIKTGEDEDEEDN 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,341,267
Number of Sequences: 1393205
Number of extensions: 13563161
Number of successful extensions: 42880
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 41820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42870
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
