Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000517A_C01 KMC000517A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM74509.1| AT4g30360/F17I23_300 [Arabidopsis thaliana] gi|25... 71 1e-11
ref|NP_194765.1| cyclic nucleotide-regulated ion channel, putati... 71 1e-11
pir||A85355 hypothetical protein AT4g30360 [imported] - Arabidop... 71 1e-11
ref|NP_180037.2| cyclic nucleotide-regulated ion channel, putati... 60 2e-08
pir||G84638 hypothetical protein At2g24610 [imported] - Arabidop... 60 2e-08
>gb|AAM74509.1| AT4g30360/F17I23_300 [Arabidopsis thaliana]
gi|25090415|gb|AAN72295.1| At4g30360/F17I23_300
[Arabidopsis thaliana]
Length = 720
Score = 70.9 bits (172), Expect = 1e-11
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Frame = -1
Query: 554 RISVKDLSLREPLPLDE-TVASEREHEEERPAGSNTSQTKLNLGVTILASRFAANTRRG- 381
R+ +L+ E + +E V E EE + +TK+NLGV +LASRFAANTRRG
Sbjct: 634 RVMENNLTAIESMENEEGEVGEELVVVEEEECVEESPRTKMNLGVMVLASRFAANTRRGV 693
Query: 380 -ALKIKD-DLPKLRKPEEPDFSTEADD 306
A ++KD +LP+ +KPEEPDFS E DD
Sbjct: 694 AAQRVKDVELPRFKKPEEPDFSAEHDD 720
>ref|NP_194765.1| cyclic nucleotide-regulated ion channel, putative; protein id:
At4g30360.1 [Arabidopsis thaliana]
Length = 692
Score = 70.9 bits (172), Expect = 1e-11
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Frame = -1
Query: 554 RISVKDLSLREPLPLDE-TVASEREHEEERPAGSNTSQTKLNLGVTILASRFAANTRRG- 381
R+ +L+ E + +E V E EE + +TK+NLGV +LASRFAANTRRG
Sbjct: 606 RVMENNLTAIESMENEEGEVGEELVVVEEEECVEESPRTKMNLGVMVLASRFAANTRRGV 665
Query: 380 -ALKIKD-DLPKLRKPEEPDFSTEADD 306
A ++KD +LP+ +KPEEPDFS E DD
Sbjct: 666 AAQRVKDVELPRFKKPEEPDFSAEHDD 692
>pir||A85355 hypothetical protein AT4g30360 [imported] - Arabidopsis thaliana
gi|7269936|emb|CAB81029.1| cyclic nucleotide and
calmodulin-regulated ion channel-like protein
[Arabidopsis thaliana]
Length = 726
Score = 70.9 bits (172), Expect = 1e-11
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Frame = -1
Query: 554 RISVKDLSLREPLPLDE-TVASEREHEEERPAGSNTSQTKLNLGVTILASRFAANTRRG- 381
R+ +L+ E + +E V E EE + +TK+NLGV +LASRFAANTRRG
Sbjct: 640 RVMENNLTAIESMENEEGEVGEELVVVEEEECVEESPRTKMNLGVMVLASRFAANTRRGV 699
Query: 380 -ALKIKD-DLPKLRKPEEPDFSTEADD 306
A ++KD +LP+ +KPEEPDFS E DD
Sbjct: 700 AAQRVKDVELPRFKKPEEPDFSAEHDD 726
>ref|NP_180037.2| cyclic nucleotide-regulated ion channel, putative; protein id:
At2g24610.1 [Arabidopsis thaliana]
Length = 726
Score = 60.1 bits (144), Expect = 2e-08
Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 12/88 (13%)
Frame = -1
Query: 542 KDLSLREPLPL---DETVA----SEREHEEERPAGS----NTSQTKLNLGVTILASRFAA 396
K LSL E +E VA E HE E +G+ +TS K + TILASRFA
Sbjct: 638 KSLSLAESFSSYDEEEAVAVAATEEMSHEGEAQSGAKARHHTSNVKPHFAATILASRFAK 697
Query: 395 NTRRGALKIKD-DLPKLRKPEEPDFSTE 315
NTRR A K+KD ++P L KP+EPDFS +
Sbjct: 698 NTRRTAHKLKDVEIPMLPKPDEPDFSVD 725
>pir||G84638 hypothetical protein At2g24610 [imported] - Arabidopsis thaliana
gi|4572671|gb|AAD23886.1| putative cyclic
nucleotide-regulated ion channel protein [Arabidopsis
thaliana]
Length = 690
Score = 60.1 bits (144), Expect = 2e-08
Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 12/88 (13%)
Frame = -1
Query: 542 KDLSLREPLPL---DETVA----SEREHEEERPAGS----NTSQTKLNLGVTILASRFAA 396
K LSL E +E VA E HE E +G+ +TS K + TILASRFA
Sbjct: 602 KSLSLAESFSSYDEEEAVAVAATEEMSHEGEAQSGAKARHHTSNVKPHFAATILASRFAK 661
Query: 395 NTRRGALKIKD-DLPKLRKPEEPDFSTE 315
NTRR A K+KD ++P L KP+EPDFS +
Sbjct: 662 NTRRTAHKLKDVEIPMLPKPDEPDFSVD 689
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,074,307
Number of Sequences: 1393205
Number of extensions: 11017400
Number of successful extensions: 40866
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 33533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40310
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
