Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000513A_C01 KMC000513A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00065529.1| hypothetical protein [Microbulbifer degradans... 32 4.9
gb|EAA41347.1| GLP_163_77087_74283 [Giardia lamblia ATCC 50803] 32 8.4
>ref|ZP_00065529.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 380
Score = 32.3 bits (72), Expect = 4.9
Identities = 15/37 (40%), Positives = 22/37 (58%)
Frame = -2
Query: 560 LDNKPSAVDASQERTTEGVLEQEDCKQSMEMPGVVVN 450
LD P+ +DA ERT + + E C +ME+ G+V N
Sbjct: 335 LDYSPTPIDALAERTKKPIGEVMSCLLTMELKGLVAN 371
>gb|EAA41347.1| GLP_163_77087_74283 [Giardia lamblia ATCC 50803]
Length = 934
Score = 31.6 bits (70), Expect = 8.4
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = -3
Query: 418 PLGPQSQNSSSVQNEVQQKGSQATPTSIANRKGKRITRSTRK 293
P PQ Q +++V NE Q K Q P + +KG+R+ + +K
Sbjct: 220 PQSPQQQTTAAVGNEKQTKIEQKKPITQKAQKGRRLEGAQKK 261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,414,170
Number of Sequences: 1393205
Number of extensions: 10209854
Number of successful extensions: 27485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27468
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
