Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000511A_C01 KMC000511A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E96642 hypothetical protein T13M11.5 [imported] - Arabidops... 80 2e-14
ref|NP_176362.1| hypothetical protein; protein id: At1g61690.1 [... 80 2e-14
ref|XP_046132.2| similar to KIAA1254 protein [Homo sapiens] 34 1.2
gb|AAM64227.1| structural polyprotein [Semliki forest virus] 34 1.2
dbj|BAA86568.2| KIAA1254 protein [Homo sapiens] 34 1.2
>pir||E96642 hypothetical protein T13M11.5 [imported] - Arabidopsis thaliana
gi|4508083|gb|AAD21427.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 1188
Score = 79.7 bits (195), Expect = 2e-14
Identities = 40/54 (74%), Positives = 46/54 (85%)
Frame = -2
Query: 434 NLKTLTRERIQLEERIKSEKIKAVNLKRSGKQAEALDALRRAKMYEKKLNSLTS 273
N T +ER QLEERIK+EK+KAV KR+GKQAEALDALRRAK+YEKKLN+L S
Sbjct: 1134 NRNTNNQERSQLEERIKAEKVKAVTFKRAGKQAEALDALRRAKLYEKKLNALAS 1187
Score = 35.4 bits (80), Expect = 0.41
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = -2
Query: 377 KIKAVNLKRSGKQAEALDALRRAKMYEKKL 288
K KA+ LKR GK AEA D L++AK+ E++L
Sbjct: 312 KRKALTLKREGKLAEAKDELKKAKILEREL 341
Score = 35.0 bits (79), Expect = 0.54
Identities = 16/36 (44%), Positives = 27/36 (74%)
Frame = -2
Query: 389 IKSEKIKAVNLKRSGKQAEALDALRRAKMYEKKLNS 282
I++ K +A+NLKR+G EA+ L++AK+ EK+L +
Sbjct: 447 IQTLKREALNLKRAGNVVEAMATLKKAKLLEKELEA 482
>ref|NP_176362.1| hypothetical protein; protein id: At1g61690.1 [Arabidopsis
thaliana]
Length = 576
Score = 79.7 bits (195), Expect = 2e-14
Identities = 40/54 (74%), Positives = 46/54 (85%)
Frame = -2
Query: 434 NLKTLTRERIQLEERIKSEKIKAVNLKRSGKQAEALDALRRAKMYEKKLNSLTS 273
N T +ER QLEERIK+EK+KAV KR+GKQAEALDALRRAK+YEKKLN+L S
Sbjct: 522 NRNTNNQERSQLEERIKAEKVKAVTFKRAGKQAEALDALRRAKLYEKKLNALAS 575
>ref|XP_046132.2| similar to KIAA1254 protein [Homo sapiens]
Length = 757
Score = 33.9 bits (76), Expect = 1.2
Identities = 23/67 (34%), Positives = 33/67 (48%), Gaps = 5/67 (7%)
Frame = -1
Query: 501 GLEDISVVPKGPERPETVKSN-AKPENSNPRENSARR----KNQIRKDKGS*FETFRKTS 337
G + + E+P TV S+ P+ P EN R +N RK+K F+ FRK +
Sbjct: 548 GNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHFKEFRKNT 607
Query: 336 *SLRCSP 316
S +CSP
Sbjct: 608 NSKKCSP 614
>gb|AAM64227.1| structural polyprotein [Semliki forest virus]
Length = 1253
Score = 33.9 bits (76), Expect = 1.2
Identities = 14/52 (26%), Positives = 28/52 (52%)
Frame = -1
Query: 525 LLSALKAAGLEDISVVPKGPERPETVKSNAKPENSNPRENSARRKNQIRKDK 370
L+SA+ A + ++ P GP +P+ K+ + P++ + + Q +KDK
Sbjct: 45 LISAVNALTMRQNAIAPAGPPKPKKKKTTKPKPKTQPKKIKGKTQQQKKKDK 96
>dbj|BAA86568.2| KIAA1254 protein [Homo sapiens]
Length = 758
Score = 33.9 bits (76), Expect = 1.2
Identities = 23/67 (34%), Positives = 33/67 (48%), Gaps = 5/67 (7%)
Frame = -1
Query: 501 GLEDISVVPKGPERPETVKSN-AKPENSNPRENSARR----KNQIRKDKGS*FETFRKTS 337
G + + E+P TV S+ P+ P EN R +N RK+K F+ FRK +
Sbjct: 549 GNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHFKEFRKNT 608
Query: 336 *SLRCSP 316
S +CSP
Sbjct: 609 NSKKCSP 615
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,077,702
Number of Sequences: 1393205
Number of extensions: 6823370
Number of successful extensions: 18139
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 16969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18082
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
