Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000507A_C01 KMC000507A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564362.1| unknown protein; protein id: At1g30755.1, suppo... 44 0.002
pir||B86433 hypothetical protein T5I8.20 - Arabidopsis thaliana ... 42 0.004
gb|EAA16805.1| hypothetical protein [Plasmodium yoelii yoelii] 34 1.2
gb|ZP_00057274.1| hypothetical protein [Thermobifida fusca] 34 1.2
ref|XP_164188.1| hypothetical protein XP_164188 [Mus musculus] 33 2.1
>ref|NP_564362.1| unknown protein; protein id: At1g30755.1, supported by cDNA:
gi_20466801 [Arabidopsis thaliana]
gi|20466802|gb|AAM20718.1| unknown protein [Arabidopsis
thaliana]
Length = 615
Score = 43.9 bits (102), Expect = 0.002
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = -3
Query: 590 EDRRLLEKVAKRKWTPGVSQSENLAGIKKTEA--TVWHFSNSVGSSPVKRLLAMQPQRYD 417
EDR LL++V ++ P +S+S+ L G+KK + +W S S G+SP K L+ + D
Sbjct: 545 EDRLLLDRVQSIRFGPNLSKSQELVGLKKNKKGFKIWALSRSTGNSP-KVDLSDKNSSSD 603
Query: 416 VLDVMDGL 393
LDV+DGL
Sbjct: 604 -LDVLDGL 610
>pir||B86433 hypothetical protein T5I8.20 - Arabidopsis thaliana
gi|4587531|gb|AAD25762.1|AC007060_20 EST gb|T43746 comes
from this gene. [Arabidopsis thaliana]
Length = 319
Score = 42.4 bits (98), Expect = 0.004
Identities = 27/67 (40%), Positives = 41/67 (60%), Gaps = 2/67 (2%)
Frame = -3
Query: 590 EDRRLLEKVAKRKWTPGVSQSENLAGIKKTEA--TVWHFSNSVGSSPVKRLLAMQPQRYD 417
EDR LL++V ++ P +S+S+ L G+KK + +W S S G+SP K L+ + D
Sbjct: 47 EDRLLLDRVQSIRFGPNLSKSQELVGLKKNKKGFKIWALSRSTGNSP-KVDLSDKNSSSD 105
Query: 416 VLDVMDG 396
LDV+DG
Sbjct: 106 -LDVLDG 111
>gb|EAA16805.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 955
Score = 34.3 bits (77), Expect = 1.2
Identities = 37/162 (22%), Positives = 70/162 (42%), Gaps = 11/162 (6%)
Frame = -1
Query: 460 HPLRGF*LCNLKGMTF---------WMSWMDYNRPICISQYWTIQIKGRFWYSNDNIYTP 308
H RG + NLKG+ F + ++ N+ + + IQ K ++ SN +++
Sbjct: 490 HFFRGIYIXNLKGINFLTYFKNCLLYRPFIKLNKIHIYNYMYAIQKKWKYDISNQKLHSS 549
Query: 307 NNLMTSIY--RNQKVILHDIIRCETGTNIHKKFKFSDTIISYDVGLSRRLIHVFFLLNSL 134
N + +I + D + E G + K + + L I+ LN
Sbjct: 550 RNFIRNILIPTISLIFKKDKEKNEQGEVENAKNEEGE--------LENANIYAHSSLNK- 600
Query: 133 MLTNSISHLSLLRNVDTFIPFHVSVFWWILSHRPHMVTDILN 8
LTN +S + +N+D + FH ++F+ L ++ ++ DI N
Sbjct: 601 RLTNLLSQI---KNIDKHLEFHNNIFYIYLKNKYYISDDIKN 639
>gb|ZP_00057274.1| hypothetical protein [Thermobifida fusca]
Length = 388
Score = 34.3 bits (77), Expect = 1.2
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -3
Query: 575 LEKVAKRKWTPGVSQSENLAGIKKTEATVWHFSNSVGSSP 456
LE+VA+ G+S + +AG T+A +WHFSN + P
Sbjct: 120 LEEVAEHSGIDGLSAEQAIAG---TQAAIWHFSNGIQLRP 156
>ref|XP_164188.1| hypothetical protein XP_164188 [Mus musculus]
Length = 172
Score = 33.5 bits (75), Expect = 2.1
Identities = 25/84 (29%), Positives = 39/84 (45%), Gaps = 1/84 (1%)
Frame = -1
Query: 289 IYRNQKVILHDIIRCETGTNIHKKFKFSD-TIISYDVGLSRRLIHVFFLLNSLMLTNSIS 113
+YRNQ L D +TG HK +SD +I + SR +F L S + S
Sbjct: 1 MYRNQSDSLDDESTKKTGALTHKLDSYSDFYLIKSFLHFSRMTPSIFLSLKSNFKSKSYV 60
Query: 112 HLSLLRNVDTFIPFHVSVFWWILS 41
++ ++ +PF + +F ILS
Sbjct: 61 AADHMKFINLLLPFFLLLFLLILS 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,214,836
Number of Sequences: 1393205
Number of extensions: 10935166
Number of successful extensions: 30853
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30823
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
