Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000501A_C01 KMC000501A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK21344.1|AC024594_8 unknown protein [Oryza sativa (japonica... 67 2e-10
ref|NP_180399.1| unknown protein; protein id: At2g28320.1 [Arabi... 62 4e-09
ref|NP_191040.1| putative protein; protein id: At3g54800.1 [Arab... 60 1e-08
dbj|BAC42639.1| unknown protein [Arabidopsis thaliana] gi|290289... 60 1e-08
ref|NP_199369.2| putative protein; protein id: At5g45560.1, supp... 50 2e-05
>gb|AAK21344.1|AC024594_8 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 773
Score = 66.6 bits (161), Expect = 2e-10
Identities = 29/36 (80%), Positives = 35/36 (96%)
Frame = -1
Query: 507 NLVVEMAFLIQGNTQDELPEVLIGTCRLNHMDASKA 400
NLV+EMAFL+QGNTQ+ELPE L+GTCRLN++DASKA
Sbjct: 732 NLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKA 767
>ref|NP_180399.1| unknown protein; protein id: At2g28320.1 [Arabidopsis thaliana]
gi|25407975|pir||D84683 hypothetical protein At2g28320
[imported] - Arabidopsis thaliana
gi|4432844|gb|AAD20693.1| unknown protein [Arabidopsis
thaliana]
Length = 446
Score = 62.0 bits (149), Expect = 4e-09
Identities = 27/35 (77%), Positives = 32/35 (91%)
Frame = -1
Query: 504 LVVEMAFLIQGNTQDELPEVLIGTCRLNHMDASKA 400
LV+EMAFLIQ NT++ELPE L+GTCR NH+DASKA
Sbjct: 407 LVIEMAFLIQANTEEELPEYLLGTCRFNHLDASKA 441
>ref|NP_191040.1| putative protein; protein id: At3g54800.1 [Arabidopsis thaliana]
gi|11358377|pir||T47639 hypothetical protein T5N23.160 -
Arabidopsis thaliana gi|7258384|emb|CAB77600.1| putative
protein [Arabidopsis thaliana]
Length = 709
Score = 60.1 bits (144), Expect = 1e-08
Identities = 26/36 (72%), Positives = 33/36 (91%)
Frame = -1
Query: 507 NLVVEMAFLIQGNTQDELPEVLIGTCRLNHMDASKA 400
NLV+EMAFLIQ NT +ELPE+L+GTCRLN++D SK+
Sbjct: 670 NLVIEMAFLIQANTVEELPELLLGTCRLNYLDVSKS 705
>dbj|BAC42639.1| unknown protein [Arabidopsis thaliana] gi|29028904|gb|AAO64831.1|
At3g54800 [Arabidopsis thaliana]
Length = 733
Score = 60.1 bits (144), Expect = 1e-08
Identities = 26/36 (72%), Positives = 33/36 (91%)
Frame = -1
Query: 507 NLVVEMAFLIQGNTQDELPEVLIGTCRLNHMDASKA 400
NLV+EMAFLIQ NT +ELPE+L+GTCRLN++D SK+
Sbjct: 694 NLVIEMAFLIQANTVEELPELLLGTCRLNYLDVSKS 729
>ref|NP_199369.2| putative protein; protein id: At5g45560.1, supported by cDNA:
gi_18086358 [Arabidopsis thaliana]
gi|18086359|gb|AAL57642.1| AT5g45560/MFC19_23
[Arabidopsis thaliana]
Length = 719
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = -1
Query: 507 NLVVEMAFLIQGNTQDELPEVLIGTCRLNHMDASKAFV 394
+LVVEMAFL+Q NT +ELPE LIG R++H++ S A V
Sbjct: 676 SLVVEMAFLVQANTPEELPERLIGAVRVSHVELSSAIV 713
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,373,366
Number of Sequences: 1393205
Number of extensions: 9967334
Number of successful extensions: 25976
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 24955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25886
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
