Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000499A_C01 KMC000499A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187142.1| putative mitogen activated protein kinase kinas... 31 7.6
ref|NP_058691.1| complement component 4 binding protein, beta [R... 31 7.6
ref|NP_192043.1| hypothetical protein; protein id: At4g01340.1 [... 31 9.9
ref|NP_617633.1| conserved hypothetical protein [Methanosarcina ... 31 9.9
>ref|NP_187142.1| putative mitogen activated protein kinase kinase; protein id:
At3g04910.1, supported by cDNA: gi_20302595 [Arabidopsis
thaliana] gi|12322854|gb|AAG51416.1|AC009465_16 putative
mitogen activated protein kinase kinase; 49861-46888
[Arabidopsis thaliana] gi|20302596|dbj|BAB91125.1|
Ser/Thr kinase [Arabidopsis thaliana]
Length = 700
Score = 31.2 bits (69), Expect = 7.6
Identities = 15/29 (51%), Positives = 17/29 (57%)
Frame = -3
Query: 416 EGTAKGFHTGSLIPHSLHRTVSLPVDAVD 330
E T K L+P L RT SLPVDA+D
Sbjct: 671 EDTVKEMFGERLVPKCLKRTTSLPVDAID 699
>ref|NP_058691.1| complement component 4 binding protein, beta [Rattus norvegicus]
gi|2493794|sp|Q63515|C4BB_RAT C4B-BINDING PROTEIN BETA
CHAIN PRECURSOR gi|2143627|pir||S57960 C4BP protein beta
chain precursor - rat gi|899382|emb|CAA90392.1| C4BP
beta chain, leader [Rattus norvegicus]
Length = 258
Score = 31.2 bits (69), Expect = 7.6
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 521 MLKGGNWNCDLSNHKSSPNFDTQRAQICEAMESIGEGTAKG--FHTGSLIPH 372
+LKG NW+ L +H +P R++ CE E+ G +G F +GS++ +
Sbjct: 109 ILKGSNWSQCLEDHTWAPPLPICRSRDCEPPETPVHGYFEGETFTSGSVVTY 160
>ref|NP_192043.1| hypothetical protein; protein id: At4g01340.1 [Arabidopsis
thaliana] gi|25407099|pir||E85017 hypothetical protein
AT4g01340 [imported] - Arabidopsis thaliana
gi|7267631|emb|CAB80943.1| hypothetical protein
[Arabidopsis thaliana]
Length = 226
Score = 30.8 bits (68), Expect = 9.9
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = +2
Query: 269 IIISTKESNECFSLLPQKIIHQQHQLGGKLSCAKSVESTNLCENPWLYLPQ-------WI 427
I+ S K + EC L ++H +H++ L A + ++ N W P+ I
Sbjct: 141 ILESEKRARECEKDLLSYLLHGKHEIFAGLDKASADDTYRSVNNLWNSYPKDEEFERFGI 200
Query: 428 PSPRKFAPFGCQNWGCFYGCSNHNSSYL 511
PS R G GC ++ NSS++
Sbjct: 201 PSKR-----GRDYHGCIISLASFNSSFI 223
>ref|NP_617633.1| conserved hypothetical protein [Methanosarcina acetivorans str.
C2A] gi|19916716|gb|AAM06113.1| conserved hypothetical
protein [Methanosarcina acetivorans str. C2A]
Length = 190
Score = 30.8 bits (68), Expect = 9.9
Identities = 24/76 (31%), Positives = 33/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 247 YMGIYIYHYNLYKRIK*VLLTTASENHTSTAST-GRETVLCKECGINEPV*KPLAVPSPM 423
Y+ I IY+ NLY + S NHT GR+ C +CG N V SP+
Sbjct: 33 YLIIVIYYENLYFCMN--CPRCKSSNHTKNGIVCGRQRYKCHDCGYNYSVELKSTASSPL 90
Query: 424 DSIASQICALWVSKLG 471
+ Q L++ LG
Sbjct: 91 --VKRQALQLYLEGLG 104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,145,811
Number of Sequences: 1393205
Number of extensions: 10035171
Number of successful extensions: 25675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25662
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
