Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000498A_C01 KMC000498A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00033139.1| hypothetical protein [Burkholderia fungorum] 34 1.0
ref|XP_220559.1| similar to RIKEN cDNA 2010001P08 gene [Mus musc... 32 5.0
gb|ZP_00081308.1| hypothetical protein [Geobacter metallireducens] 31 6.5
>ref|ZP_00033139.1| hypothetical protein [Burkholderia fungorum]
Length = 399
Score = 33.9 bits (76), Expect = 1.0
Identities = 24/87 (27%), Positives = 41/87 (46%), Gaps = 10/87 (11%)
Frame = +2
Query: 65 KKLRRRWKFTTIYMLG-----ESDAKHDGSLSELTRLSLLC-----TLALHKSSGYFLIF 214
++L RW F I G + DA H G ++E +++ + LALH G +
Sbjct: 252 ERLYSRWDFKHILSGGYVDIIQPDASHAGGITECRKIASMAEAYDVALALHCPLGPIALA 311
Query: 215 PCVMVVYMKGNAFVSARSR*NVYIHYS 295
C+ + + NAF+ +S + IHY+
Sbjct: 312 TCLQIDAVSYNAFIQEQS---LGIHYN 335
>ref|XP_220559.1| similar to RIKEN cDNA 2010001P08 gene [Mus musculus] [Rattus
norvegicus]
Length = 496
Score = 31.6 bits (70), Expect = 5.0
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +2
Query: 8 AVTMTTNDNQRLYSMEMQYKKLRRRWKFTTIYMLGESDAKHDGSLSELTRLSLLCTLALH 187
A + T+ + ++ + L++RW +Y+ +S + EL RLS+L
Sbjct: 72 ATSCTSGPPRPFPELDKNHSDLKKRWPKKVVYLAAKSTGEVSSQCGELVRLSILQEQVWD 131
Query: 188 KSSG 199
K++G
Sbjct: 132 KAAG 135
>gb|ZP_00081308.1| hypothetical protein [Geobacter metallireducens]
Length = 383
Score = 31.2 bits (69), Expect = 6.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 205 PYLPVCDGGLYEGKCFRFGPFQVE--CIHSLLLSKYKVTCSVHWYRLLLK 348
P+L C GG E + G F + C H + ++ WYRLLLK
Sbjct: 309 PHLATCKGGCNEMSLMKTGEFHNDPYCFHRIEQHIFERELRNPWYRLLLK 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,924,913
Number of Sequences: 1393205
Number of extensions: 8878700
Number of successful extensions: 21527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21526
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
