KMC000497A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC000497A_C01 KMC000497A_c01
tctaTCAACGACAAAGGACAAACTATTTATTTTAGTTTTTTATATGCAAATTGAACATAA
GGGAGTATAAGGGGTGCCCCAAACCCATCATACTGTATGTTATCAAGCAAATGCTTGCAA
ATAAAGCAAACAATATAACACTTGAAAAAGAAACAATAATCAGAACGTGAGGCTAGGAAA
GAAACATAAAAGATATTGGCGCTTCACCCAAATGGAAAAAAGAAATAATAGCCCACTATT
CATGTTAAATATCCATGTTGTTATATCACAAAGCCACCGCCCACTATCAGCAACAGAAAT
AGGAGATAACCAATTAATTCTCCTATTCCAGATGATCAAAGAACCTGCAGCAAGCTCTAT
TTAATCCACATATTGGCTTCCCATGCAGTTCCACTATCTCACAACATATTTAGGCAGACC
AATGGATTCTCAATCCATTCGAAGATAACAATAGAAAAAGTATCTCTCTCTTGCCTTTAT
CCAAAGCCAAGTTCTGTATGGAATTACACCCACCTCCTGATCAACATCTGCTTCTTTTCC
CCAAAATATGGCATGGTTCCTCAAGAATCATTTTCTGGATCATATCCTCAATGGAAGTTT
TAACCTCAAGGATTACAGGAGCAAGTCTCACATGGTGCTCAAAGTCAAGATCA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000497A_C01 KMC000497A_c01
         (653 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_569037.1| expressed protein; protein id: At5g66540.1, sup...    38  0.14
gb|EAA02582.1| ebiP139 [Anopheles gambiae str. PEST]                   33  3.4
gb|ZP_00103302.1| hypothetical protein [Desulfitobacterium hafni...    33  4.4
ref|XP_233885.1| similar to KIAA1805 protein [Homo sapiens] [Rat...    32  5.7
gb|EAA21520.1| hypothetical protein [Plasmodium yoelii yoelii]         32  7.5

>ref|NP_569037.1| expressed protein; protein id: At5g66540.1, supported by cDNA:
           gi_14488062 [Arabidopsis thaliana]
           gi|10177535|dbj|BAB10930.1| gene_id:K1F13.21~unknown
           protein [Arabidopsis thaliana]
           gi|14488063|gb|AAK63852.1|AF389279_1 AT5g66540/K1F13_21
           [Arabidopsis thaliana] gi|23506141|gb|AAN31082.1|
           At5g66540/K1F13_21 [Arabidopsis thaliana]
          Length = 524

 Score = 37.7 bits (86), Expect = 0.14
 Identities = 19/32 (59%), Positives = 24/32 (74%), Gaps = 1/32 (3%)
 Frame = -2

Query: 652 DLDFEHHVRLAPVIL-EVKTSIEDMIQKMILE 560
           DLDFEH+ R APVI  EV  S+ED+I+  I+E
Sbjct: 326 DLDFEHNARPAPVITEEVTASLEDLIKSRIIE 357

>gb|EAA02582.1| ebiP139 [Anopheles gambiae str. PEST]
          Length = 422

 Score = 33.1 bits (74), Expect = 3.4
 Identities = 24/65 (36%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
 Frame = -2

Query: 235 WAIISFFHLGEAPISFMFLS*PHVLIIVSFSSVILFALFASICLITYS---MMGLGHPLY 65
           WAI++ FH    PI  +F S    + IV+     L A +  + L+  S      LGHPLY
Sbjct: 317 WAILAAFH---TPILHLFASKGVAIRIVTLFCCWLVASYFFVGLLFVSNTAFNNLGHPLY 373

Query: 64  SLMFN 50
           S  FN
Sbjct: 374 STGFN 378

>gb|ZP_00103302.1| hypothetical protein [Desulfitobacterium hafniense]
          Length = 255

 Score = 32.7 bits (73), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 492 FCMELHPPPDQHLLLFPKIWHGSSRI 569
           FC ELH P    LL  P +WH S+R+
Sbjct: 110 FCRELHVPASPSLLATPTMWHLSTRV 135

>ref|XP_233885.1| similar to KIAA1805 protein [Homo sapiens] [Rattus norvegicus]
          Length = 5639

 Score = 32.3 bits (72), Expect = 5.7
 Identities = 24/90 (26%), Positives = 41/90 (44%), Gaps = 2/90 (2%)
 Frame = +2

Query: 209  QMEKRNNSPLFMLNIHVVISQSHRPLSATEIGDNQLILLFQMIKEPAASSI*STYWLPMQ 388
            Q++    SPL       +  Q  + L+ T     Q +   ++ KEP A  I S  W+P+Q
Sbjct: 2063 QLQGEKTSPL------AIGLQEPKTLNLTSEPQPQGVTTEELNKEPQAEHIRSVQWIPLQ 2116

Query: 389  FHYLTTYLG--RPMDSQSIRR*Q*KKYLSL 472
              +   +LG      SQ ++R + K ++ L
Sbjct: 2117 EFHSARFLGFNSGPPSQGVKRTERKPFIKL 2146

>gb|EAA21520.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 790

 Score = 32.0 bits (71), Expect = 7.5
 Identities = 18/77 (23%), Positives = 38/77 (48%), Gaps = 6/77 (7%)
 Frame = +1

Query: 313 INSPIPDDQRTCSKLYLIHILASHAVPLSHNIFRQTNGFSIHSKITIEKVSLSC------ 474
           +N  + ++    ++ YLI++L   A  +  + F+    F+  + IT +++ L C      
Sbjct: 576 VNPNVSENNHILNETYLIYLLEKTASLIIDHFFQNIFSFNFMTNITAQQLLLDCNAIENI 635

Query: 475 LYPKPSSVWNYTHLLIN 525
           LY  P+ +  + +L IN
Sbjct: 636 LYKIPNVLTKFENLKIN 652

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 601,397,572
Number of Sequences: 1393205
Number of extensions: 13957261
Number of successful extensions: 32074
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 30967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32067
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GENLf059f08 BP065518 1 490
2 GNf075c10 BP072903 5 190
3 GENLf019h03 BP063394 30 548
4 GENLf049c05 BP064950 183 653




Lotus japonicus
Kazusa DNA Research Institute