Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000496A_C01 KMC000496A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173412.1| unknown protein; protein id: At1g19835.1 [Arabi... 59 4e-08
pir||E86331 hypothetical protein F6F9.12 - Arabidopsis thaliana ... 59 4e-08
ref|NP_175226.1| mysoin-like protein; protein id: At1g47900.1 [A... 43 0.002
ref|NP_195335.1| myosin-like protein; protein id: At4g36120.1 [A... 39 0.050
ref|NP_572325.1| CG3950-PA [Drosophila melanogaster] gi|22831824... 38 0.085
>ref|NP_173412.1| unknown protein; protein id: At1g19835.1 [Arabidopsis thaliana]
Length = 982
Score = 58.9 bits (141), Expect = 4e-08
Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Frame = -3
Query: 491 NNLRSPSDTESNFQAT--SPVRNPNHRPTKSTSSSASSTPTPEKHARGFSRFFSSKGK 324
+ L SPSD ++ T SPV + HR TKS SSS+SS TPEKH+RGFSRFFS+K K
Sbjct: 926 SKLSSPSDKDTPSMNTMKSPVAS-KHRHTKSNSSSSSSGLTPEKHSRGFSRFFSTKAK 982
>pir||E86331 hypothetical protein F6F9.12 - Arabidopsis thaliana
gi|10086489|gb|AAG12549.1|AC007797_9 Unknown Protein
[Arabidopsis thaliana]
Length = 1024
Score = 58.9 bits (141), Expect = 4e-08
Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Frame = -3
Query: 491 NNLRSPSDTESNFQAT--SPVRNPNHRPTKSTSSSASSTPTPEKHARGFSRFFSSKGK 324
+ L SPSD ++ T SPV + HR TKS SSS+SS TPEKH+RGFSRFFS+K K
Sbjct: 926 SKLSSPSDKDTPSMNTMKSPVAS-KHRHTKSNSSSSSSGLTPEKHSRGFSRFFSTKAK 982
>ref|NP_175226.1| mysoin-like protein; protein id: At1g47900.1 [Arabidopsis thaliana]
gi|25405242|pir||D96519 mysoin-like protein, 11013-7318
[imported] - Arabidopsis thaliana
gi|12323626|gb|AAG51782.1|AC079679_2 mysoin-like protein;
11013-7318 [Arabidopsis thaliana]
Length = 1054
Score = 43.1 bits (100), Expect = 0.002
Identities = 24/56 (42%), Positives = 35/56 (61%)
Frame = -3
Query: 497 FSNNLRSPSDTESNFQATSPVRNPNHRPTKSTSSSASSTPTPEKHARGFSRFFSSK 330
F + + PSD+E++ TSP R + + + S +S+ TPEK +RG SRFFSSK
Sbjct: 1000 FMESPKCPSDSETSDTTTSPSRVGS----RLSRSGSSTNATPEKASRGISRFFSSK 1051
>ref|NP_195335.1| myosin-like protein; protein id: At4g36120.1 [Arabidopsis thaliana]
gi|7487187|pir||T05505 hypothetical protein T19K4.250 -
Arabidopsis thaliana gi|3036816|emb|CAA18506.1|
myosin-like protein [Arabidopsis thaliana]
gi|7270564|emb|CAB81521.1| myosin-like protein
[Arabidopsis thaliana]
Length = 981
Score = 38.5 bits (88), Expect = 0.050
Identities = 21/37 (56%), Positives = 23/37 (61%), Gaps = 1/37 (2%)
Frame = -3
Query: 431 NPN-HRPTKSTSSSASSTPTPEKHARGFSRFFSSKGK 324
NP H KS+S S+SS EKH RG RFFSSK K
Sbjct: 941 NPTVHAIMKSSSVSSSSKEDNEKHTRGLGRFFSSKSK 977
>ref|NP_572325.1| CG3950-PA [Drosophila melanogaster] gi|22831824|gb|AAF46171.2|
CG3950-PA [Drosophila melanogaster]
Length = 3166
Score = 37.7 bits (86), Expect = 0.085
Identities = 19/58 (32%), Positives = 34/58 (57%), Gaps = 2/58 (3%)
Frame = -3
Query: 530 VQRLGPESPLHFSNNL--RSPSDTESNFQATSPVRNPNHRPTKSTSSSASSTPTPEKH 363
V+ +GP P H S +SPS T S + SP R+P+ R + + ++++++T T +H
Sbjct: 2435 VEVVGPAPPSHISEKPQGKSPSPTSSRSLSRSPSRSPSRRTSTNLNTTSTNTTTTTEH 2492
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,395,195
Number of Sequences: 1393205
Number of extensions: 11168808
Number of successful extensions: 35088
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 31702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34716
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
