Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000495A_C04 KMC000495A_c04
(969 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86232 cysteine proteinase (EC 3.4.22.-) [similarity] - Ara... 39 0.12
ref|NP_563855.1| cysteine protease XBCP3; protein id: At1g09850.... 39 0.12
gb|AAK71314.1|AF388175_1 papain-like cysteine peptidase XBCP3 [A... 39 0.12
gb|AAD53011.1|AF089848_1 senescence-specific cysteine protease [... 38 0.27
gb|AAO51122.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 37 0.60
>pir||G86232 cysteine proteinase (EC 3.4.22.-) [similarity] - Arabidopsis
thaliana gi|2160175|gb|AAB60738.1| Strong similarity to
Dianthus cysteine proteinase (gb|U17135). [Arabidopsis
thaliana]
Length = 416
Score = 38.9 bits (89), Expect = 0.12
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -3
Query: 874 SEAAANELISLEAFKIWCKVYGKEYRDEKEKQSRFQNFK--RSLETETPFIPGA---LTF 710
S +++++ IS E F WC+ +GK Y E+E+Q R Q FK T+ I A L+
Sbjct: 18 SSSSSSDDIS-ELFDDWCQKHGKTYGSEEERQQRIQIFKDNHDFVTQHNLITNATYSLSL 76
Query: 709 PSLADQTEKEFQ 674
+ AD T EF+
Sbjct: 77 NAFADLTHHEFK 88
>ref|NP_563855.1| cysteine protease XBCP3; protein id: At1g09850.1, supported by
cDNA: gi_14600256 [Arabidopsis thaliana]
Length = 437
Score = 38.9 bits (89), Expect = 0.12
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -3
Query: 874 SEAAANELISLEAFKIWCKVYGKEYRDEKEKQSRFQNFK--RSLETETPFIPGA---LTF 710
S +++++ IS E F WC+ +GK Y E+E+Q R Q FK T+ I A L+
Sbjct: 20 SSSSSSDDIS-ELFDDWCQKHGKTYGSEEERQQRIQIFKDNHDFVTQHNLITNATYSLSL 78
Query: 709 PSLADQTEKEFQ 674
+ AD T EF+
Sbjct: 79 NAFADLTHHEFK 90
>gb|AAK71314.1|AF388175_1 papain-like cysteine peptidase XBCP3 [Arabidopsis thaliana]
Length = 437
Score = 38.9 bits (89), Expect = 0.12
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -3
Query: 874 SEAAANELISLEAFKIWCKVYGKEYRDEKEKQSRFQNFK--RSLETETPFIPGA---LTF 710
S +++++ IS E F WC+ +GK Y E+E+Q R Q FK T+ I A L+
Sbjct: 20 SSSSSSDDIS-ELFDDWCQKHGKTYGSEEERQQRIQIFKDNHDFVTQHNLITNATYSLSL 78
Query: 709 PSLADQTEKEFQ 674
+ AD T EF+
Sbjct: 79 NAFADLTHHEFK 90
>gb|AAD53011.1|AF089848_1 senescence-specific cysteine protease [Brassica napus]
Length = 346
Score = 37.7 bits (86), Expect = 0.27
Identities = 30/101 (29%), Positives = 43/101 (41%), Gaps = 8/101 (7%)
Frame = -3
Query: 883 TTDSEAAANELISLEAFKIWCKVYGKEYRDEKEKQSRFQNFKRSLE--TETPFIPGALTF 710
TT S +ELI + W +G+ Y D EK +R+ FKR++E +P TF
Sbjct: 22 TTLSRLLDDELIMQKKHDEWMAEHGRTYADMNEKNNRYVVFKRNVERIERLNNVPAGRTF 81
Query: 709 P----SLADQTEKEFQEFCE--KHDLQKYDQPMNNSISIKH 605
AD T EF+ K D + Q S S ++
Sbjct: 82 KLAVNQFADLTNDEFRFMYTGYKGDFVLFSQSQTKSTSFRY 122
>gb|AAO51122.1| similar to Arabidopsis thaliana (Mouse-ear cress). SAG12 protein
[Dictyostelium discoideum]
Length = 358
Score = 36.6 bits (83), Expect = 0.60
Identities = 23/80 (28%), Positives = 36/80 (44%), Gaps = 5/80 (6%)
Frame = -3
Query: 841 EAFKIWCKVYGKEYRDEKEKQSRFQNFKRSLETE---TPFIPGALTFPS--LADQTEKEF 677
+ F W K + K Y+D E ++RF NFK +++ G F S +D +E+EF
Sbjct: 42 DTFNHWAKKHSKIYKDSIEMENRFSNFKENMKKNIELNSMHAGKAKFESNGFSDLSEEEF 101
Query: 676 QEFCEKHDLQKYDQPMNNSI 617
F + + NSI
Sbjct: 102 SNFHLNKAFKGKPSHLRNSI 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 780,703,731
Number of Sequences: 1393205
Number of extensions: 16123899
Number of successful extensions: 41647
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 39557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41613
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 55187681368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
