Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000494A_C02 KMC000494A_c02
(649 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181375.1| unknown protein; protein id: At2g38410.1 [Arabi... 100 2e-20
gb|AAF63957.1| CALNUC [Spodoptera frugiperda] 46 5e-04
emb|CAC12663.1| heat-shock related protein Hsr1 [Candida tropica... 45 0.001
gb|AAM09323.2| similar to ATP-dependent RNA helicase, putative; ... 43 0.003
ref|NP_291044.1| SWI/SNF related, matrix associated, actin depen... 42 0.005
>ref|NP_181375.1| unknown protein; protein id: At2g38410.1 [Arabidopsis thaliana]
gi|7487155|pir||T02504 hypothetical protein At2g38410
[imported] - Arabidopsis thaliana
gi|3395431|gb|AAC28763.1| unknown protein [Arabidopsis
thaliana]
Length = 671
Score = 100 bits (248), Expect = 2e-20
Identities = 69/147 (46%), Positives = 85/147 (56%), Gaps = 14/147 (9%)
Frame = -1
Query: 649 QPQPQLQHNQQSQPQPQFQNQHF---QYPGTYPPPPWAATPGYPNYQNHLSS------TN 497
QPQPQ Q QSQPQ Q Q Q Q P YPPPPWA+T Y ++ T+
Sbjct: 526 QPQPQ-QGYSQSQPQAQVQMQPSTRPQNPYEYPPPPWASTSANAYYTPRANASASYTDTS 584
Query: 496 AL---STPQANTPYTSAVRGDPVASSGQSNPPNATGQRPFVPSYRLFEDLNVFGNTDGR- 329
AL S Q+N+ T A GDP A+S SN + GQ+PFVPSYRLFEDL+VFG+ DG+
Sbjct: 585 ALAGRSLQQSNSFPTRA--GDPQATSTASNSGVSVGQKPFVPSYRLFEDLDVFGSADGKH 642
Query: 328 AKVTGSGTSSSSMSGTM-GPGMVGGRK 251
K S S ++SG+ M+GGRK
Sbjct: 643 NKPANSSNGSQNLSGSQTQQSMIGGRK 669
>gb|AAF63957.1| CALNUC [Spodoptera frugiperda]
Length = 584
Score = 45.8 bits (107), Expect = 5e-04
Identities = 31/86 (36%), Positives = 37/86 (42%), Gaps = 1/86 (1%)
Frame = -1
Query: 646 PQPQLQHNQQSQPQPQFQNQHFQYP-GTYPPPPWAATPGYPNYQNHLSSTNALSTPQANT 470
PQ Q Q QQ+Q Q Q Q+ Q P G Y PP A G P Q + PQAN
Sbjct: 459 PQGQYQQPQQAQYQQPPQGQYQQPPQGQYQQPPQAQYQGQPP-QGQAPVAQGQAPPQANL 517
Query: 469 PYTSAVRGDPVASSGQSNPPNATGQR 392
A PV + GQ+ P Q+
Sbjct: 518 NQAQAPSAQPVRAQGQAQPSQGQAQQ 543
>emb|CAC12663.1| heat-shock related protein Hsr1 [Candida tropicalis]
Length = 728
Score = 44.7 bits (104), Expect = 0.001
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Frame = -1
Query: 646 PQPQLQHNQQSQPQPQFQ--NQHFQYPGTY-----------PPPPWAATPGYPNYQNHLS 506
P P L NQQ P PQF +FQYPG+ PPP AA P P+ +
Sbjct: 239 PPPPLAANQQQLPTPQFVYGQPYFQYPGSIIPPQSQPQPVPQPPPQAAAPPVPSGVTQFT 298
Query: 505 STNALSTPQANTPYTSAVRGDPVASSGQSNP 413
+ + +P P + + P +S + P
Sbjct: 299 NFSQFPSPSPQQPISQMMNLQPSQNSASNTP 329
>gb|AAM09323.2| similar to ATP-dependent RNA helicase, putative; protein id:
At1g35530.1 [Arabidopsis thaliana] [Dictyostelium
discoideum]
Length = 1789
Score = 43.1 bits (100), Expect = 0.003
Identities = 29/89 (32%), Positives = 37/89 (40%), Gaps = 1/89 (1%)
Frame = -1
Query: 649 QPQPQLQHNQQSQPQPQFQNQHFQYPGTYPPPPWAATPGYP-NYQNHLSSTNALSTPQAN 473
Q Q Q Q QQ QPQ Q Q Q FQ P Y P P P + +++ + +T +N
Sbjct: 67 QQQQQQQQQQQQQPQQQQQQQPFQ-PFQYQSPKKIQNPNVPISLPQPINNNSTTTTTTSN 125
Query: 472 TPYTSAVRGDPVASSGQSNPPNATGQRPF 386
TPY S Q N N P+
Sbjct: 126 TPYKSPQTIQQQQQQQQQNVNNIKNTSPY 154
>ref|NP_291044.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily f, member 1 [Mus musculus]
gi|14150461|gb|AAK54504.1|AF268912_1 Osa1 nuclear
protein [Mus musculus]
Length = 1902
Score = 42.4 bits (98), Expect = 0.005
Identities = 32/108 (29%), Positives = 40/108 (36%), Gaps = 11/108 (10%)
Frame = -1
Query: 649 QPQPQLQHNQQSQPQPQFQNQHFQYPGTYPPPPWAATPGYPNYQNHLSSTNALSTPQANT 470
Q QPQ Q Q QP + Q Q P P P+ + Q H S S PQA +
Sbjct: 117 QQQPQTQQPQLQSSQPPYSQQPSQPPHQQSPTPYPSQQS--TTQQHPQSQPPYSQPQAQS 174
Query: 469 PYTSAVRGDPVASS-----------GQSNPPNATGQRPFVPSYRLFED 359
PY P +SS Q + A Q+ F P L +D
Sbjct: 175 PYQQQQPQQPASSSLSQQAAYPQPQPQQSQQTAYSQQRFPPPQELSQD 222
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 598,425,985
Number of Sequences: 1393205
Number of extensions: 14650555
Number of successful extensions: 67380
Number of sequences better than 10.0: 616
Number of HSP's better than 10.0 without gapping: 49311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64108
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
