Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000492A_C01 KMC000492A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC14002.1| cytochrome oxidase c subunit I [Meara sp. THRL1] 34 1.3
ref|NP_473285.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.9
>emb|CAC14002.1| cytochrome oxidase c subunit I [Meara sp. THRL1]
Length = 218
Score = 34.3 bits (77), Expect = 1.3
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = -3
Query: 225 IQTCYLSQLVVKGTYLSWLSSAHGLQFLFFDLVPI-FGS*VEFVIYLSSCSVYL----*N 61
I+ L+Q + G Y + L + HGL +FF +PI GS F+I +S ++ + N
Sbjct: 21 IRMIMLAQTDIDGQYFNTLVTQHGLLMIFFMAMPILIGSFGNFLIPVSMNTIDMAMPRLN 80
Query: 60 NETFYF*SPPLSLCIFFYCF 1
N F+F P + C+F+ F
Sbjct: 81 NLAFWF--LPFAGCMFYVGF 98
>ref|NP_473285.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494250|pir||T18501 hypothetical protein C0760c -
malaria parasite (Plasmodium falciparum)
gi|3758855|emb|CAB11140.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 3394
Score = 33.1 bits (74), Expect = 2.9
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 63 SKDIQNMNSNKLQTQLTSQIWVLNQKTKIVTHVHL 167
+ DIQ + + KLQ Q+ I +N+K KI+ H++L
Sbjct: 2034 NNDIQIIENEKLQEQVDQYITTINEKDKIIVHLNL 2068
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,582,769
Number of Sequences: 1393205
Number of extensions: 9419160
Number of successful extensions: 21010
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20993
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
