Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000491A_C01 KMC000491A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197033.1| putative protein; protein id: At5g15290.1 [Arab... 159 2e-38
emb|CAD40985.1| OSJNBa0072F16.9 [Oryza sativa (japonica cultivar... 152 3e-36
ref|NP_172868.1| unknown protein; protein id: At1g14160.1 [Arabi... 143 2e-33
ref|NP_187762.1| unknown protein; protein id: At3g11550.1 [Arabi... 122 5e-27
ref|NP_196238.1| putative protein; protein id: At5g06200.1 [Arab... 121 8e-27
>ref|NP_197033.1| putative protein; protein id: At5g15290.1 [Arabidopsis thaliana]
gi|11357888|pir||T49964 hypothetical protein F8M21.180 -
Arabidopsis thaliana gi|7671498|emb|CAB89339.1| putative
protein [Arabidopsis thaliana]
gi|26449778|dbj|BAC42012.1| unknown protein [Arabidopsis
thaliana] gi|28372942|gb|AAO39953.1| At5g15290
[Arabidopsis thaliana]
Length = 187
Score = 159 bits (403), Expect = 2e-38
Identities = 79/120 (65%), Positives = 97/120 (80%)
Frame = -2
Query: 607 YDDLPTLRLFVVASAFASGYLILSLPLSILHITRSRARRTRVILIILDMVMLTSLTAASS 428
Y+DLP L FVVA+A SGYLILSL L+ +HI + + + TR++LIILD+ ML LT+ +S
Sbjct: 67 YNDLPALTFFVVANAVVSGYLILSLTLAFVHIVKRKTQNTRILLIILDVAMLGLLTSGAS 126
Query: 427 AAAAIVYLAHKGNAKANWFAFCQQYDSFCERISGSLIGSFIAIPLFIMLILFSALVLSKR 248
+AAAIVYLAH GN K NWFA CQQ++SFCERISGSLIGSFIAI L I+LIL SA+ LS+R
Sbjct: 127 SAAAIVYLAHNGNNKTNWFAICQQFNSFCERISGSLIGSFIAIVLLILLILLSAIALSRR 186
>emb|CAD40985.1| OSJNBa0072F16.9 [Oryza sativa (japonica cultivar-group)]
Length = 186
Score = 152 bits (384), Expect = 3e-36
Identities = 74/120 (61%), Positives = 91/120 (75%)
Frame = -2
Query: 607 YDDLPTLRLFVVASAFASGYLILSLPLSILHITRSRARRTRVILIILDMVMLTSLTAASS 428
Y DLP+ FV A+A YL+LS+PLSI+HI R RAR +R+ L+ D ML LTA +S
Sbjct: 66 YSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRPRARYSRLFLVFFDTAMLALLTAGAS 125
Query: 427 AAAAIVYLAHKGNAKANWFAFCQQYDSFCERISGSLIGSFIAIPLFIMLILFSALVLSKR 248
AAAAIVYLAHKGN +ANWF+ CQQ+DSFCERISGSLIGSF A+ L ++LI SA L++R
Sbjct: 126 AAAAIVYLAHKGNVRANWFSICQQFDSFCERISGSLIGSFAAMVLLVVLITLSAFALARR 185
>ref|NP_172868.1| unknown protein; protein id: At1g14160.1 [Arabidopsis thaliana]
gi|25513451|pir||B86275 F7A19.24 protein - Arabidopsis
thaliana gi|5080791|gb|AAD39301.1|AC007576_24
Hypothetical protein [Arabidopsis thaliana]
gi|26449701|dbj|BAC41974.1| unknown protein [Arabidopsis
thaliana]
Length = 209
Score = 143 bits (360), Expect = 2e-33
Identities = 67/119 (56%), Positives = 93/119 (77%)
Frame = -2
Query: 607 YDDLPTLRLFVVASAFASGYLILSLPLSILHITRSRARRTRVILIILDMVMLTSLTAASS 428
Y DLPTL FVVA+A + GYL+LSLP+SI HI ++A+ +R+IL+++D VML +++ +S
Sbjct: 90 YSDLPTLMFFVVANAISGGYLVLSLPVSIFHIFSTQAKTSRIILLVVDTVMLALVSSGAS 149
Query: 427 AAAAIVYLAHKGNAKANWFAFCQQYDSFCERISGSLIGSFIAIPLFIMLILFSALVLSK 251
AA A VYLAH+GN ANW CQQ+D FCERISGSLIGSF A+ L +++++ SA+ LS+
Sbjct: 150 AATATVYLAHEGNTTANWPPICQQFDGFCERISGSLIGSFCAVILLMLIVINSAISLSR 208
>ref|NP_187762.1| unknown protein; protein id: At3g11550.1 [Arabidopsis thaliana]
gi|12322903|gb|AAG51441.1|AC008153_14 unknown protein;
80797-81587 [Arabidopsis thaliana]
Length = 204
Score = 122 bits (305), Expect = 5e-27
Identities = 54/119 (45%), Positives = 82/119 (68%)
Frame = -2
Query: 607 YDDLPTLRLFVVASAFASGYLILSLPLSILHITRSRARRTRVILIILDMVMLTSLTAASS 428
YDDLPT + FV+A A GYL+LSLP+S++ I R A R++L++LD +L TAA+S
Sbjct: 85 YDDLPTFQFFVIAMALVGGYLVLSLPISVVTILRPLATAPRLLLLVLDTGVLALNTAAAS 144
Query: 427 AAAAIVYLAHKGNAKANWFAFCQQYDSFCERISGSLIGSFIAIPLFIMLILFSALVLSK 251
+AAAI YLAH GN NW CQQ+ FC++ SG+++ +F+++ F +L++ S + L +
Sbjct: 145 SAAAISYLAHSGNQNTNWLPICQQFGDFCQKSSGAVVSAFVSVVFFTILVVISGVALKR 203
>ref|NP_196238.1| putative protein; protein id: At5g06200.1 [Arabidopsis thaliana]
gi|9759318|dbj|BAB09685.1|
gb|AAF00668.1~gene_id:MBL20.8~similar to unknown protein
[Arabidopsis thaliana]
Length = 202
Score = 121 bits (303), Expect = 8e-27
Identities = 56/119 (47%), Positives = 80/119 (67%)
Frame = -2
Query: 607 YDDLPTLRLFVVASAFASGYLILSLPLSILHITRSRARRTRVILIILDMVMLTSLTAASS 428
YDDLPT + FVVA A +GYL+LSLP S++ I R A R++L++LD L TAA+S
Sbjct: 83 YDDLPTFQFFVVAIAIVAGYLVLSLPFSVVTIVRPLAVAPRLLLLVLDTAALALDTAAAS 142
Query: 427 AAAAIVYLAHKGNAKANWFAFCQQYDSFCERISGSLIGSFIAIPLFIMLILFSALVLSK 251
AAAAIVYLAH GN NW CQQ+ FC++ SG+++ +F ++ +L++ S + L +
Sbjct: 143 AAAAIVYLAHNGNTNTNWLPICQQFGDFCQKTSGAVVSAFASVTFLAILVVISGVSLKR 201
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,023,261
Number of Sequences: 1393205
Number of extensions: 10818433
Number of successful extensions: 30656
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 29454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30627
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
