>KMC000488A_C01 KMC000488A_c01
gtgtgatcaaaatttaagaattgGAGTGGGTGAGTTCGAAATCTCCCTTCAAATTCTCTC
TTAAGAAACCCCTTTAGAATTATCAAAGATACACAATATTTGTGGTTTCTCCTCACCGTT
GGCTTATCAAGCCTTCATTTCTAGAACACTTTGGGCACCGCCACCTCTTCTTCCCCTTCC
AGTTTGTGATTTTCTTCCCTTTAGACTTTTCCTTGGGCTTCAAGGAGATAGAACCATTAC
TAGTTTGGAGATTCATGGAGTTTAAGCATAGATCCACATCATTAGCCCTCTTATGGACTT
CCTTATCTCCTTAGCCTCTTGTGAATCTGGGATTATCCACATGCTCATAATGTAACAATT
CGGAGCCACTTCTTGGTCCCCTTGAATTGTAACTATTTCGGTGTTGTCAGTTGAAAACTT
CGATGCAAGCCTCCTAGTTAATATGCACATGTCGAACACATTCAATGAAGGTCAACATAA
GATTGCATTGTAAGAGGTAAGGTTGTTCGCTAACATGAACTAACGAGT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000488A_C01 KMC000488A_c01
         (528 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|ZP_00075780.1| hypothetical protein [Methanosarcina barkeri]        36  0.32
sp|P98005|CO13_THETH Cytochrome c oxidase polypeptide I+III (Cyt...    34  1.2
ref|XP_228991.1| similar to IGF-II mRNA-binding protein 1 [Homo ...    33  1.6
ref|ZP_00086805.1| hypothetical protein [Pseudomonas fluorescens...    33  2.7
dbj|BAC41735.1| hypothetical protein [Macaca fascicularis]             32  4.6

>gb|ZP_00075780.1| hypothetical protein [Methanosarcina barkeri]
          Length = 280

 Score = 35.8 bits (81), Expect = 0.32
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 304 KEVHKRANDVDLCLNS---MNLQTSNGSISLKPKEKSKGKKIT 185
           KE+ K+ ND+ LC      +NLQ S   I +KP EK    KIT
Sbjct: 235 KEIEKKENDMPLCWREGVVLNLQNSRALIKMKPDEKEIELKIT 277

>sp|P98005|CO13_THETH Cytochrome c oxidase polypeptide I+III (Cytochrome c aa(3) subunit
           1) (Cytochrome caa3) (A-protein) gi|420806|pir||A46616
           cytochrome-c oxidase (EC 1.9.3.1) chain I - Thermus
           aquaticus gi|155083|gb|AAA27485.1| cytochrome c oxidase
           subunits precursor
          Length = 791

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 123 LIKPSFLEHFGHRHL----FFPFQFVIFFPLDFSLGFKEIEPLLVWRFMEFKHRSTSLAL 290
           L+  SF  HF H  L    F PF+F +   +   + F  ++    W F +F H S+    
Sbjct: 667 LVSSSFTVHFAHHDLRRGRFNPFRFGLLVTIILGVLFFLVQS---WEFYQFYHHSSWQEN 723

Query: 291 LWTS 302
           LWT+
Sbjct: 724 LWTA 727

>ref|XP_228991.1| similar to IGF-II mRNA-binding protein 1 [Homo sapiens] [Rattus
           norvegicus]
          Length = 152

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 19/60 (31%), Positives = 30/60 (49%)
 Frame = +3

Query: 123 LIKPSFLEHFGHRHLFFPFQFVIFFPLDFSLGFKEIEPLLVWRFMEFKHRSTSLALLWTS 302
           LI PSF+ H GH       +  +F P++ +L  + +  LL+       HR   + LLW+S
Sbjct: 27  LISPSFIFHKGHSPYLKALKAAMFIPINETLTTELLLGLLLLFTPILAHRKCRVQLLWSS 86

>ref|ZP_00086805.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
          Length = 795

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -3

Query: 388 NSRGPRSGSELLHYEHVDNP 329
           +SR PRSGS +LHY+  DNP
Sbjct: 621 DSRSPRSGSAMLHYQPEDNP 640

>dbj|BAC41735.1| hypothetical protein [Macaca fascicularis]
          Length = 241

 Score = 32.0 bits (71), Expect = 4.6
 Identities = 13/30 (43%), Positives = 21/30 (69%), Gaps = 4/30 (13%)
 Frame = -3

Query: 217 PKEKSKGKKITNWKGKKR----WRCPKCSR 140
           P+ + KG+ +T ++GKKR    ++CPKC R
Sbjct: 148 PQARPKGEGLTPYQGKKRCFGEYKCPKCKR 177

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,125,279
Number of Sequences: 1393205
Number of extensions: 9535018
Number of successful extensions: 28143
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28136
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GNLf013h07 BP075591 1 202 2 GENLf019b01 BP063360 5 366 3 GENLf077a06 BP066506 40 435 4 GENLf074b01 BP066330 41 529

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