Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000487A_C01 KMC000487A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194945.2| putative protein; protein id: At4g32180.1, supp... 186 1e-46
pir||T05410 hypothetical protein F10M6.180 - Arabidopsis thalian... 133 1e-30
pir||T04627 hypothetical protein F10N7.10 - Arabidopsis thaliana... 98 9e-20
ref|NP_608907.1| CG5828-PA [Drosophila melanogaster] gi|7296946|... 91 8e-18
gb|AAM52026.1| RE73673p [Drosophila melanogaster] 91 8e-18
>ref|NP_194945.2| putative protein; protein id: At4g32180.1, supported by cDNA:
gi_20466745 [Arabidopsis thaliana]
gi|20466746|gb|AAM20690.1| putative protein [Arabidopsis
thaliana]
Length = 870
Score = 186 bits (473), Expect = 1e-46
Identities = 87/109 (79%), Positives = 101/109 (91%)
Frame = -1
Query: 594 AAEAGGLLVDAMINTSESSKENSSSVPLMVVENGCGSPCIDFRQVSSELAAAAKDADLII 415
AAE GGLLVDAM+N + SK++S+S PLMVVENGCGSPCID RQVSSELAAAAKDADL++
Sbjct: 759 AAEMGGLLVDAMVNPGDGSKKDSTSAPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVV 818
Query: 414 LEGMGRSLHTNLYARFKCDALKLAMVKNQRLAEKLVKGNIYDCICKYEP 268
LEGMGR+LHTN A+F+C+ALKLAMVKNQRLAEKL+KGNIYDC+C+YEP
Sbjct: 819 LEGMGRALHTNFNAQFQCEALKLAMVKNQRLAEKLIKGNIYDCVCRYEP 867
>pir||T05410 hypothetical protein F10M6.180 - Arabidopsis thaliana
gi|2864625|emb|CAA16972.1| putative protein [Arabidopsis
thaliana] gi|7270122|emb|CAB79936.1| putative protein
[Arabidopsis thaliana]
Length = 838
Score = 133 bits (335), Expect = 1e-30
Identities = 63/83 (75%), Positives = 75/83 (89%)
Frame = -1
Query: 594 AAEAGGLLVDAMINTSESSKENSSSVPLMVVENGCGSPCIDFRQVSSELAAAAKDADLII 415
AAE GGLLVDAM+N + SK++S+S PLMVVENGCGSPCID RQVSSELAAAAKDADL++
Sbjct: 756 AAEMGGLLVDAMVNPGDGSKKDSTSAPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVV 815
Query: 414 LEGMGRSLHTNLYARFKCDALKL 346
LEGMGR+LHTN A+F+C+ALK+
Sbjct: 816 LEGMGRALHTNFNAQFQCEALKV 838
>pir||T04627 hypothetical protein F10N7.10 - Arabidopsis thaliana (fragment)
gi|2827619|emb|CAA16571.1| hypothetical protein
[Arabidopsis thaliana]
Length = 233
Score = 97.8 bits (242), Expect = 9e-20
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = -1
Query: 594 AAEAGGLLVDAMINTSESSKENSSSVPLMVVENGCGSPCIDFRQVSSELAAAAKDADLI 418
AAE GGLLVDAM+N + SK++S+S PLMVVENGCGSPCID RQVSSELAAAAKDADL+
Sbjct: 166 AAEMGGLLVDAMVNPGDGSKKDSTSAPLMVVENGCGSPCIDLRQVSSELAAAAKDADLV 224
>ref|NP_608907.1| CG5828-PA [Drosophila melanogaster] gi|7296946|gb|AAF52219.1|
CG5828-PA [Drosophila melanogaster]
Length = 361
Score = 91.3 bits (225), Expect = 8e-18
Identities = 48/106 (45%), Positives = 69/106 (64%), Gaps = 2/106 (1%)
Frame = -1
Query: 573 LVDAMINTSESSKENSSSVPLMVVENGCGSPCIDFRQVSSEL--AAAAKDADLIILEGMG 400
L+D E ++ S L+V NG PC+D R + EL A AA + DL+++EGMG
Sbjct: 254 LLDDCSRECEVLEQAWSKGQLLVYANGQTGPCLDMRTLPKELCDAIAANETDLLVIEGMG 313
Query: 399 RSLHTNLYARFKCDALKLAMVKNQRLAEKLVKGNIYDCICKYEPAA 262
R+LHTNL ARF C+ LKLA++KN+ LA+ L +++ +CK+EPAA
Sbjct: 314 RALHTNLNARFGCETLKLAVIKNKWLAKYLGGEDMFAVVCKFEPAA 359
>gb|AAM52026.1| RE73673p [Drosophila melanogaster]
Length = 389
Score = 91.3 bits (225), Expect = 8e-18
Identities = 48/106 (45%), Positives = 69/106 (64%), Gaps = 2/106 (1%)
Frame = -1
Query: 573 LVDAMINTSESSKENSSSVPLMVVENGCGSPCIDFRQVSSEL--AAAAKDADLIILEGMG 400
L+D E ++ S L+V NG PC+D R + EL A AA + DL+++EGMG
Sbjct: 282 LLDDCSRECEVLEQAWSKGQLLVYANGQTGPCLDMRTLPKELCDAIAANETDLLVIEGMG 341
Query: 399 RSLHTNLYARFKCDALKLAMVKNQRLAEKLVKGNIYDCICKYEPAA 262
R+LHTNL ARF C+ LKLA++KN+ LA+ L +++ +CK+EPAA
Sbjct: 342 RALHTNLNARFGCETLKLAVIKNKWLAKYLGGEDMFAVVCKFEPAA 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,966,380
Number of Sequences: 1393205
Number of extensions: 9970738
Number of successful extensions: 26904
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 26083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26889
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
