Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000486A_C04 KMC000486A_c04
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO37538.1| putative argonaute protein [Oryza sativa (japonic... 130 4e-36
gb|AAF79718.1|AC020889_26 T1N15.2 [Arabidopsis thaliana] 129 6e-33
ref|NP_175274.1| leaf development protein Argonaute; protein id:... 129 6e-33
pir||T52134 Zwille protein [imported] - Arabidopsis thaliana gi|... 129 5e-32
ref|NP_199194.1| PINHEAD (gb|AAD40098.1); translation initiation... 129 5e-32
>gb|AAO37538.1| putative argonaute protein [Oryza sativa (japonica cultivar-group)]
Length = 1058
Score = 130 bits (327), Expect(3) = 4e-36
Identities = 59/69 (85%), Positives = 63/69 (90%)
Frame = -1
Query: 641 PREFDFYLNSHAGIQGTSRPTHYHVLYDENNFTADELQGLTNNLCYTYARCTRSVSIVPP 462
P EFDFYL SHAGIQGTSRPTHYHVLYDEN+FTAD LQ LTNNLCYTYARCTR+VS+VPP
Sbjct: 941 PTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPP 1000
Query: 461 AYYATLSCF 435
AYYA L+ F
Sbjct: 1001 AYYAHLAAF 1009
Score = 37.7 bits (86), Expect(3) = 4e-36
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Frame = -2
Query: 448 HLAAFRARSYIEGESEMGSASAGAGG---ATRSNVEIK 344
HLAAFRAR Y+EGES G ++ G+ G A VE++
Sbjct: 1005 HLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPVEVR 1042
Score = 25.8 bits (55), Expect(3) = 4e-36
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 333 LTDNVKDVMFYC 298
+ +NVKDVMFYC
Sbjct: 1047 IKENVKDVMFYC 1058
>gb|AAF79718.1|AC020889_26 T1N15.2 [Arabidopsis thaliana]
Length = 1123
Score = 129 bits (325), Expect(3) = 6e-33
Identities = 60/69 (86%), Positives = 62/69 (88%)
Frame = -1
Query: 641 PREFDFYLNSHAGIQGTSRPTHYHVLYDENNFTADELQGLTNNLCYTYARCTRSVSIVPP 462
P EFDFYL SHAGIQGTSRP HYHVL+DENNFTAD LQ LTNNLCYTYARCTRSVSIVPP
Sbjct: 997 PTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPP 1056
Query: 461 AYYATLSCF 435
AYYA L+ F
Sbjct: 1057 AYYAHLAAF 1065
Score = 30.0 bits (66), Expect(3) = 6e-33
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Frame = -2
Query: 448 HLAAFRARSYIE------GESEMGSASAGAGGATRS 359
HLAAFRAR Y+E G GS + G G A RS
Sbjct: 1061 HLAAFRARFYMEPETSDSGSMASGSMARGGGMAGRS 1096
Score = 23.5 bits (49), Expect(3) = 6e-33
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 333 LTDNVKDVMFYC 298
L +NVK VMFYC
Sbjct: 1112 LKENVKRVMFYC 1123
>ref|NP_175274.1| leaf development protein Argonaute; protein id: At1g48410.1,
supported by cDNA: gi_2149639 [Arabidopsis thaliana]
gi|11386626|sp|O04379|AGO1_ARATH Argonaute protein
gi|2149640|gb|AAC18440.1| Argonaute protein [Arabidopsis
thaliana] gi|5733867|gb|AAD49755.1|AC007932_3 Identical
to Argonaute protein from Arabidopsis thaliana gb|U91995.
EST gb|AA720232 comes from this gene
gi|24030354|gb|AAN41341.1| putative leaf development
protein Argonaute [Arabidopsis thaliana]
Length = 1048
Score = 129 bits (325), Expect(3) = 6e-33
Identities = 60/69 (86%), Positives = 62/69 (88%)
Frame = -1
Query: 641 PREFDFYLNSHAGIQGTSRPTHYHVLYDENNFTADELQGLTNNLCYTYARCTRSVSIVPP 462
P EFDFYL SHAGIQGTSRP HYHVL+DENNFTAD LQ LTNNLCYTYARCTRSVSIVPP
Sbjct: 922 PTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPP 981
Query: 461 AYYATLSCF 435
AYYA L+ F
Sbjct: 982 AYYAHLAAF 990
Score = 30.0 bits (66), Expect(3) = 6e-33
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Frame = -2
Query: 448 HLAAFRARSYIE------GESEMGSASAGAGGATRS 359
HLAAFRAR Y+E G GS + G G A RS
Sbjct: 986 HLAAFRARFYMEPETSDSGSMASGSMARGGGMAGRS 1021
Score = 23.5 bits (49), Expect(3) = 6e-33
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 333 LTDNVKDVMFYC 298
L +NVK VMFYC
Sbjct: 1037 LKENVKRVMFYC 1048
>pir||T52134 Zwille protein [imported] - Arabidopsis thaliana
gi|2959781|emb|CAA11429.1| Zwille protein [Arabidopsis
thaliana]
Length = 988
Score = 129 bits (323), Expect(3) = 5e-32
Identities = 59/69 (85%), Positives = 62/69 (89%)
Frame = -1
Query: 641 PREFDFYLNSHAGIQGTSRPTHYHVLYDENNFTADELQGLTNNLCYTYARCTRSVSIVPP 462
P EFDFYL SHAGIQGTSRP HYHVL+DENNFTAD +Q LTNNLCYTYARCTRSVSIVPP
Sbjct: 871 PTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPP 930
Query: 461 AYYATLSCF 435
AYYA L+ F
Sbjct: 931 AYYAHLAAF 939
Score = 27.7 bits (60), Expect(3) = 5e-32
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = -2
Query: 448 HLAAFRARSYIEGESEMGSASAG 380
HLAAFRAR Y+E E + S G
Sbjct: 935 HLAAFRARFYLEPEIMQDNGSPG 957
Score = 23.5 bits (49), Expect(3) = 5e-32
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 333 LTDNVKDVMFYC 298
L +NVK VMFYC
Sbjct: 977 LKENVKRVMFYC 988
>ref|NP_199194.1| PINHEAD (gb|AAD40098.1); translation initiation factor; protein id:
At5g43810.1 [Arabidopsis thaliana]
gi|12643935|sp|Q9XGW1|PINH_ARATH PINHEAD protein (ZWILLE
protein) gi|5107374|gb|AAD40098.1|AF154272_1 PINHEAD
[Arabidopsis thaliana] gi|10177951|dbj|BAB11310.1|
PINHEAD [Arabidopsis thaliana]
Length = 988
Score = 129 bits (323), Expect(3) = 5e-32
Identities = 59/69 (85%), Positives = 62/69 (89%)
Frame = -1
Query: 641 PREFDFYLNSHAGIQGTSRPTHYHVLYDENNFTADELQGLTNNLCYTYARCTRSVSIVPP 462
P EFDFYL SHAGIQGTSRP HYHVL+DENNFTAD +Q LTNNLCYTYARCTRSVSIVPP
Sbjct: 871 PTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPP 930
Query: 461 AYYATLSCF 435
AYYA L+ F
Sbjct: 931 AYYAHLAAF 939
Score = 27.7 bits (60), Expect(3) = 5e-32
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = -2
Query: 448 HLAAFRARSYIEGESEMGSASAG 380
HLAAFRAR Y+E E + S G
Sbjct: 935 HLAAFRARFYLEPEIMQDNGSPG 957
Score = 23.5 bits (49), Expect(3) = 5e-32
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 333 LTDNVKDVMFYC 298
L +NVK VMFYC
Sbjct: 977 LKENVKRVMFYC 988
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,265,750
Number of Sequences: 1393205
Number of extensions: 10815611
Number of successful extensions: 23912
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 23324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23899
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
