Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000485A_C01 KMC000485A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51237 scarecrow-like protein 6 [imported] - Arabidopsis th... 142 5e-33
ref|NP_191926.1| scarecrow-like 6 (SCL6); protein id: At4g00150.... 142 5e-33
ref|NP_182041.1| putative SCARECROW gene regulator; protein id: ... 127 9e-29
gb|AAO42084.1| putative SCARECROW gene regulator [Arabidopsis th... 127 9e-29
gb|AAM90848.1|AF481952_1 hairy meristem [Petunia x hybrida] 126 3e-28
>pir||T51237 scarecrow-like protein 6 [imported] - Arabidopsis thaliana
(fragment) gi|4580519|gb|AAD24406.1|AF036303_1
scarecrow-like 6 [Arabidopsis thaliana]
Length = 378
Score = 142 bits (357), Expect = 5e-33
Identities = 69/114 (60%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Frame = -3
Query: 612 LQCYSALLESLDAVNVNXDVLQKIERHFVQPAIKKIVLGHHHSQEK-LTPWRNLFLQSGF 436
L ++AL ESLDAVN N D +QKIER +QP I+K+VL E+ + W+ +FLQ GF
Sbjct: 265 LHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTWQAMFLQMGF 324
Query: 435 SPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC*SA 274
SP T SNFTE+QAECLVQR PVRGF VE+K +SL+LCWQR EL+ VS WRC S+
Sbjct: 325 SPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRCRSS 378
>ref|NP_191926.1| scarecrow-like 6 (SCL6); protein id: At4g00150.1, supported by
cDNA: gi_18087576 [Arabidopsis thaliana]
gi|7486541|pir||T01343 hypothetical protein F6N15.20 -
Arabidopsis thaliana gi|3193314|gb|AAC19296.1| contains
similarity to Arabidopsis scarecrow (GB:U62798)
[Arabidopsis thaliana] gi|7267102|emb|CAB80773.1|
scarecrow-like 6 (SCL6) [Arabidopsis thaliana]
gi|18087577|gb|AAL58919.1|AF462831_1 AT4g00150/F6N15_20
[Arabidopsis thaliana] gi|22137044|gb|AAM91367.1|
At4g00150/F6N15_20 [Arabidopsis thaliana]
Length = 558
Score = 142 bits (357), Expect = 5e-33
Identities = 69/114 (60%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Frame = -3
Query: 612 LQCYSALLESLDAVNVNXDVLQKIERHFVQPAIKKIVLGHHHSQEK-LTPWRNLFLQSGF 436
L ++AL ESLDAVN N D +QKIER +QP I+K+VL E+ + W+ +FLQ GF
Sbjct: 445 LHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTWQAMFLQMGF 504
Query: 435 SPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC*SA 274
SP T SNFTE+QAECLVQR PVRGF VE+K +SL+LCWQR EL+ VS WRC S+
Sbjct: 505 SPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRCRSS 558
>ref|NP_182041.1| putative SCARECROW gene regulator; protein id: At2g45160.1
[Arabidopsis thaliana] gi|25408931|pir||B84887 probable
SCARECROW gene regulator [imported] - Arabidopsis
thaliana
Length = 640
Score = 127 bits (320), Expect = 9e-29
Identities = 64/110 (58%), Positives = 82/110 (74%)
Frame = -3
Query: 612 LQCYSALLESLDAVNVNXDVLQKIERHFVQPAIKKIVLGHHHSQEKLTPWRNLFLQSGFS 433
LQ +++LLESLDA N N D IER +VQP+I+K+++ H E+ PWR LF Q GFS
Sbjct: 533 LQYHTSLLESLDA-NQNQDD-SSIERFWVQPSIEKLLMKRHRWIERSPPWRILFTQCGFS 590
Query: 432 PFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC 283
P + S EAQAECL+QR PVRGF VE++ SSLV+CWQRKEL++VS W+C
Sbjct: 591 PASLSQMAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAWKC 640
>gb|AAO42084.1| putative SCARECROW gene regulator [Arabidopsis thaliana]
Length = 640
Score = 127 bits (320), Expect = 9e-29
Identities = 64/110 (58%), Positives = 82/110 (74%)
Frame = -3
Query: 612 LQCYSALLESLDAVNVNXDVLQKIERHFVQPAIKKIVLGHHHSQEKLTPWRNLFLQSGFS 433
LQ +++LLESLDA N N D IER +VQP+I+K+++ H E+ PWR LF Q GFS
Sbjct: 533 LQYHTSLLESLDA-NQNQDD-SSIERFWVQPSIEKLLMKRHRWIERSPPWRILFTQCGFS 590
Query: 432 PFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC 283
P + S EAQAECL+QR PVRGF VE++ SSLV+CWQRKEL++VS W+C
Sbjct: 591 PASLSQMAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAWKC 640
>gb|AAM90848.1|AF481952_1 hairy meristem [Petunia x hybrida]
Length = 721
Score = 126 bits (316), Expect = 3e-28
Identities = 58/110 (52%), Positives = 79/110 (71%)
Frame = -3
Query: 612 LQCYSALLESLDAVNVNXDVLQKIERHFVQPAIKKIVLGHHHSQEKLTPWRNLFLQSGFS 433
LQ Y LL S+DA NV ++ +KIE+ + P+I+ +VLG S +++ WRNLF +GFS
Sbjct: 612 LQYYEILLASIDAANVTPEIGKKIEKSLLLPSIENMVLGRLRSPDRMPQWRNLFASAGFS 671
Query: 432 PFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC 283
P FSN TE QAEC+V+R V GF VE++ SSLVLCW+++EL+S TWRC
Sbjct: 672 PVAFSNLTEIQAECVVKRTQVGGFHVEKRQSSLVLCWKQQELLSALTWRC 721
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,552,717
Number of Sequences: 1393205
Number of extensions: 10899530
Number of successful extensions: 26137
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 25416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26095
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
