Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000483A_C02 KMC000483A_c02
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens] 31 0.19
gb|EAA16688.1| acyl carrier protein, putative [Plasmodium yoelii... 37 0.23
dbj|BAC03887.1| unnamed protein product [Homo sapiens] 31 0.68
sp|Q48806|DLPA_LEGPN Protein dlpA gi|2120838|pir||S61390 dlpA pr... 33 3.3
sp|P02836|HMEN_DROME Segmentation polarity homeobox protein engr... 33 4.3
>ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect(2) = 0.19
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 132 NSASFIPSKKYQLLLTSNSSTIHSLNSIT*SPSANSGIHFSRSSSLNSTFPSEVG 296
+S+S PS +S+SS+ S +S + SPS++S S SSS +S+ PS G
Sbjct: 122 SSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSG 176
Score = 25.4 bits (54), Expect(2) = 0.19
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +1
Query: 337 TSAFASDEGNSGVTNKSSKKRNESSSRVFPSMLSP---TPVMSCDASPLPWFMNAPKSDV 507
+S+ + +S + +SS + SSS PS SP +P SC ++ L +P+S
Sbjct: 188 SSSSSPSSSSSSPSPRSSSPSSSSSSTSSPSSSSPSSSSPSSSCPSAALGRRPQSPQSS- 246
Query: 508 VCAATP 525
CA P
Sbjct: 247 HCAPFP 252
>gb|EAA16688.1| acyl carrier protein, putative [Plasmodium yoelii yoelii]
Length = 142
Score = 37.0 bits (84), Expect = 0.23
Identities = 29/99 (29%), Positives = 45/99 (45%)
Frame = +3
Query: 12 VILILWFIYSFIIIYSQFSQIK*NPTIQKYPRKKTTTAFHNSASFIPSKKYQLLLTSNSS 191
VIL +FI+ F Y+ F + + +Q R+ T+F N+ SF+ KK + L S
Sbjct: 11 VILFFYFIFFF---YAAFKNMNNHAPLQIASRRNEKTSFRNNDSFMEKKKSRTSLNSTFD 67
Query: 192 TIHSLNSIT*SPSANSGIHFSRSSSLNSTFPSEVGGFSL 308
I + S S + LNS+F ++G SL
Sbjct: 68 EIKGIISKQLSVEED-------KIQLNSSFTKDLGADSL 99
>dbj|BAC03887.1| unnamed protein product [Homo sapiens]
Length = 258
Score = 30.8 bits (68), Expect(2) = 0.68
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 132 NSASFIPSKKYQLLLTSNSSTIHSLNSIT*SPSANSGIHFSRSSSLNSTFPSEVG 296
+S+S PS +S+SS+ S +S + SPS++S S SSS +S+ PS G
Sbjct: 123 SSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSG 177
Score = 23.5 bits (49), Expect(2) = 0.68
Identities = 20/71 (28%), Positives = 32/71 (44%), Gaps = 8/71 (11%)
Frame = +1
Query: 337 TSAFASDEGNSGVTNKSSKKRNESSSRVFPSMLSP--------TPVMSCDASPLPWFMNA 492
+S+ + +S + +SS + SSS PS SP +P SC ++ L +
Sbjct: 189 SSSSSPSSSSSSPSPRSSSPSSSSSSTSSPSTSSPSSSSPSSSSPSSSCPSAALGRRPQS 248
Query: 493 PKSDVVCAATP 525
P+S CA P
Sbjct: 249 PQSS-HCAPFP 258
>sp|Q48806|DLPA_LEGPN Protein dlpA gi|2120838|pir||S61390 dlpA protein - Legionella
pneumophila gi|563806|gb|AAA79904.1| DlpA
Length = 615
Score = 33.1 bits (74), Expect = 3.3
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 87 TIQKYPRKKTTTAFHNSASFIPS-KKYQLLLTSNSSTI 197
TIQ PR+K TAFHN+A++I K+ +++ N+ I
Sbjct: 438 TIQYLPREKKGTAFHNAANYIDKVPKHSVIVIDNNGQI 475
>sp|P02836|HMEN_DROME Segmentation polarity homeobox protein engrailed
gi|72258|pir||WJFFEN homeotic protein engrailed - fruit
fly (Drosophila melanogaster) gi|763443|gb|AAA65478.1|
engrailed protein
Length = 552
Score = 32.7 bits (73), Expect = 4.3
Identities = 20/48 (41%), Positives = 30/48 (61%)
Frame = +3
Query: 180 SNSSTIHSLNSIT*SPSANSGIHFSRSSSLNSTFPSEVGGFSLTISAS 323
SN+STI S +S+ S S++S S +SSLNS+ S +G ++AS
Sbjct: 333 SNASTISSTSSVATSSSSSSSGCSSAASSLNSSPSSRLGASGSGVNAS 380
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,465,957
Number of Sequences: 1393205
Number of extensions: 12132183
Number of successful extensions: 36020
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 34045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35932
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
