Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000482A_C03 KMC000482A_c03
(775 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193779.1| UDP-glucose 4-epimerase - like protein; protein... 245 4e-64
dbj|BAC45055.1| OJ1417_E01.21 [Oryza sativa (japonica cultivar-g... 244 1e-63
dbj|BAC24804.1| UDP-galactose 4-epimerase-like protein [Oryza sa... 244 1e-63
dbj|BAC53786.1| UDP-galactose 4-epimerase-like protein [Oryza sa... 241 6e-63
ref|NP_199261.1| putative protein; protein id: At5g44480.1 [Arab... 241 1e-62
>ref|NP_193779.1| UDP-glucose 4-epimerase - like protein; protein id: At4g20460.1
[Arabidopsis thaliana] gi|7437272|pir||T10588 UDPglucose
4-epimerase homolog F9F13.110 - Arabidopsis thaliana
gi|5262169|emb|CAB45812.1| UDP-glucose 4-epimerase-like
protein [Arabidopsis thaliana]
gi|7268842|emb|CAB79046.1| UDP-glucose 4-epimerase-like
protein [Arabidopsis thaliana]
gi|22136648|gb|AAM91643.1| putative UDP-glucose
4-epimerase protein [Arabidopsis thaliana]
Length = 379
Score = 245 bits (626), Expect = 4e-64
Identities = 115/140 (82%), Positives = 129/140 (92%)
Frame = -1
Query: 775 ISGACFDAARGITSGLKVKGTDYNTPDGTCVRDYIDVTDLVDAHVKALEKAQPGQVGIYN 596
ISGACFDAARG+ GL+VKGTDY T DGTCVRDYIDVTDLVDAHVKALEKA+P VGIYN
Sbjct: 240 ISGACFDAARGVIPGLQVKGTDYKTGDGTCVRDYIDVTDLVDAHVKALEKAKPRNVGIYN 299
Query: 595 VGTGKGRSVKEFVDACKKATGVNIKVDFLPRRPGDYAEVYSDPAKIRRELNWTAQHTDLQ 416
VGTGKGRSVKEFV+ACKKATGV+IKVDFLPRRPGDYAEVYSDPAKI R+LNW+A++T+LQ
Sbjct: 300 VGTGKGRSVKEFVEACKKATGVDIKVDFLPRRPGDYAEVYSDPAKILRDLNWSARYTNLQ 359
Query: 415 KSIQVAWKWQKSRPDGYGVS 356
+S++VAWKWQK+ P GY S
Sbjct: 360 ESLEVAWKWQKTHPHGYASS 379
>dbj|BAC45055.1| OJ1417_E01.21 [Oryza sativa (japonica cultivar-group)]
Length = 399
Score = 244 bits (623), Expect = 1e-63
Identities = 116/143 (81%), Positives = 125/143 (87%)
Frame = -1
Query: 775 ISGACFDAARGITSGLKVKGTDYNTPDGTCVRDYIDVTDLVDAHVKALEKAQPGQVGIYN 596
ISGACFDAA GI GLKVKGTDY TPDGTCVRDYIDVTDLVDAHVKAL KA+ G+VGIYN
Sbjct: 255 ISGACFDAALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNKAERGKVGIYN 314
Query: 595 VGTGKGRSVKEFVDACKKATGVNIKVDFLPRRPGDYAEVYSDPAKIRRELNWTAQHTDLQ 416
VGTGKGRSVKEFV+ACKKATGV+IKVD+ PRRPGDYAEVYSDPAKI ELNWTAQHTDL
Sbjct: 315 VGTGKGRSVKEFVEACKKATGVDIKVDYFPRRPGDYAEVYSDPAKINSELNWTAQHTDLL 374
Query: 415 KSIQVAWKWQKSRPDGYGVSSAI 347
+S++VAW WQK GYG A+
Sbjct: 375 ESLRVAWTWQKKHRSGYGPPQAM 397
>dbj|BAC24804.1| UDP-galactose 4-epimerase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 421
Score = 244 bits (623), Expect = 1e-63
Identities = 116/143 (81%), Positives = 125/143 (87%)
Frame = -1
Query: 775 ISGACFDAARGITSGLKVKGTDYNTPDGTCVRDYIDVTDLVDAHVKALEKAQPGQVGIYN 596
ISGACFDAA GI GLKVKGTDY TPDGTCVRDYIDVTDLVDAHVKAL KA+ G+VGIYN
Sbjct: 277 ISGACFDAALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNKAERGKVGIYN 336
Query: 595 VGTGKGRSVKEFVDACKKATGVNIKVDFLPRRPGDYAEVYSDPAKIRRELNWTAQHTDLQ 416
VGTGKGRSVKEFV+ACKKATGV+IKVD+ PRRPGDYAEVYSDPAKI ELNWTAQHTDL
Sbjct: 337 VGTGKGRSVKEFVEACKKATGVDIKVDYFPRRPGDYAEVYSDPAKINSELNWTAQHTDLL 396
Query: 415 KSIQVAWKWQKSRPDGYGVSSAI 347
+S++VAW WQK GYG A+
Sbjct: 397 ESLRVAWTWQKKHRSGYGPPQAM 419
>dbj|BAC53786.1| UDP-galactose 4-epimerase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 406
Score = 241 bits (616), Expect = 6e-63
Identities = 112/138 (81%), Positives = 124/138 (89%)
Frame = -1
Query: 775 ISGACFDAARGITSGLKVKGTDYNTPDGTCVRDYIDVTDLVDAHVKALEKAQPGQVGIYN 596
ISGACFDAA GI GLKVKGTDY T DGTC+RDYIDVTDLVDAHVKAL KA+P +VGIYN
Sbjct: 267 ISGACFDAALGIIPGLKVKGTDYPTTDGTCIRDYIDVTDLVDAHVKALNKAEPSKVGIYN 326
Query: 595 VGTGKGRSVKEFVDACKKATGVNIKVDFLPRRPGDYAEVYSDPAKIRRELNWTAQHTDLQ 416
VGTG+GRSVKEFVDACKKATGVNIK+++L RRPGDYAEVYSDP KI ELNWTAQ+TDL+
Sbjct: 327 VGTGRGRSVKEFVDACKKATGVNIKIEYLSRRPGDYAEVYSDPTKINTELNWTAQYTDLK 386
Query: 415 KSIQVAWKWQKSRPDGYG 362
+S+ VAW+WQKS P GYG
Sbjct: 387 ESLSVAWRWQKSHPRGYG 404
>ref|NP_199261.1| putative protein; protein id: At5g44480.1 [Arabidopsis thaliana]
gi|9758701|dbj|BAB09155.1| contains similarity to
UDP-glucose 4-epimerase~gene_id:MFC16.15 [Arabidopsis
thaliana]
Length = 436
Score = 241 bits (614), Expect = 1e-62
Identities = 113/137 (82%), Positives = 123/137 (89%)
Frame = -1
Query: 775 ISGACFDAARGITSGLKVKGTDYNTPDGTCVRDYIDVTDLVDAHVKALEKAQPGQVGIYN 596
ISGACFDAARG GL+VKGTDY T DGTC+RDYIDVTDLVDAHVKALEKAQP +VGIYN
Sbjct: 297 ISGACFDAARGFIPGLQVKGTDYKTSDGTCIRDYIDVTDLVDAHVKALEKAQPRKVGIYN 356
Query: 595 VGTGKGRSVKEFVDACKKATGVNIKVDFLPRRPGDYAEVYSDPAKIRRELNWTAQHTDLQ 416
VGTGKGRSVKEFV+ACKKATGV IKVDFLPRRPGDYAEVYSDP KI ++LNWTA+ T+LQ
Sbjct: 357 VGTGKGRSVKEFVEACKKATGVEIKVDFLPRRPGDYAEVYSDPTKILKDLNWTARFTNLQ 416
Query: 415 KSIQVAWKWQKSRPDGY 365
S+QVAW+WQK P GY
Sbjct: 417 DSLQVAWRWQKIHPHGY 433
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 642,207,566
Number of Sequences: 1393205
Number of extensions: 13900595
Number of successful extensions: 34451
Number of sequences better than 10.0: 675
Number of HSP's better than 10.0 without gapping: 33083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34035
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
