Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000481A_C01 KMC000481A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN60755.1|AF405554_3 polyketide synthase [Cryptosporidium pa... 33 2.9
gb|EAA28481.1| predicted protein [Neurospora crassa] 32 3.8
>gb|AAN60755.1|AF405554_3 polyketide synthase [Cryptosporidium parvum]
Length = 13414
Score = 32.7 bits (73), Expect = 2.9
Identities = 19/49 (38%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Frame = +2
Query: 383 C*IPIQADFWLFHINEEP---FRIEIQHPISGAANSVTIRVPEETSTNQ 520
C I I + LF+IN++P FRI I H + N+ TI P +NQ
Sbjct: 5989 CLIQIGEETKLFNINQDPIAKFRIGINHEVINECNNETILNPNYQESNQ 6037
>gb|EAA28481.1| predicted protein [Neurospora crassa]
Length = 384
Score = 32.3 bits (72), Expect = 3.8
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 202 KLMKFGCLGYFAHLMTTSVSELVIGALLLSSAIILYMRFTCY*LKTLVCFLLTRTTLP 29
K F CLG + T +++ +GA LL + + RF + TL+ TTLP
Sbjct: 154 KARLFECLGQTTSFVGTPLAKASLGAFLLRLVTVTWHRFAVWGAMTLMFLSSVETTLP 211
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,699,231
Number of Sequences: 1393205
Number of extensions: 7892525
Number of successful extensions: 13290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13288
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
