Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000480A_C01 KMC000480A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_518531.1| PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia sola... 34 1.0
ref|NP_608646.2| CG31671-PB [Drosophila melanogaster] gi|2294543... 32 5.0
gb|AAK93421.1| LD46453p [Drosophila melanogaster] 32 5.0
gb|AAD32709.1|AF148069_1 ACC protein [Entamoeba histolytica] 32 5.0
ref|NP_722763.1| CG31671-PA [Drosophila melanogaster] gi|2294543... 32 5.0
>ref|NP_518531.1| PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
gi|17427420|emb|CAD13938.1| PUTATIVE SIGNAL PEPTIDE
PROTEIN [Ralstonia solanacearum]
Length = 191
Score = 34.3 bits (77), Expect = 1.0
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = -1
Query: 536 REVYHLSKNVILMKKPMMLCRDTGSLQHRTEPLRG*NY 423
++VYHLS NV+L K M+L DT L RT+P G NY
Sbjct: 50 KQVYHLSGNVVLTKGTMVLRSDTADL--RTDP-EGYNY 84
>ref|NP_608646.2| CG31671-PB [Drosophila melanogaster] gi|22945438|gb|AAN10442.1|
CG31671-PB [Drosophila melanogaster]
Length = 721
Score = 32.0 bits (71), Expect = 5.0
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
Frame = -3
Query: 534 RSLPSLQKCHSHEEANDALQGYRVTATQNRTSKR------VELLLDSHKEVPPLSFKKKR 373
R S K E+AN+ G R + ++NR +R + + SH+ + K+R
Sbjct: 439 RESQSRSKDDQQEQANNGSNGSRQSESRNRDVERDRHDQQDQRSISSHRSSRDIVRVKER 498
Query: 372 LELTEHQKEVRRAQ-------QGRKRD----NGG-----HGPGIRT 283
E HQ+ R+Q Q RKR+ GG HG G+ T
Sbjct: 499 TEAELHQRSRERSQRLEELEAQQRKREKTSRRGGEERIRHGDGVET 544
>gb|AAK93421.1| LD46453p [Drosophila melanogaster]
Length = 721
Score = 32.0 bits (71), Expect = 5.0
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
Frame = -3
Query: 534 RSLPSLQKCHSHEEANDALQGYRVTATQNRTSKR------VELLLDSHKEVPPLSFKKKR 373
R S K E+AN+ G R + ++NR +R + + SH+ + K+R
Sbjct: 439 RESQSRSKDDQQEQANNGSNGSRQSESRNRDVERDRHDQQDQRSISSHRSSRDIVRVKER 498
Query: 372 LELTEHQKEVRRAQ-------QGRKRD----NGG-----HGPGIRT 283
E HQ+ R+Q Q RKR+ GG HG G+ T
Sbjct: 499 TEAELHQRSRERSQRLEELEAQQRKREKTSRRGGEERIRHGDGVET 544
>gb|AAD32709.1|AF148069_1 ACC protein [Entamoeba histolytica]
Length = 297
Score = 32.0 bits (71), Expect = 5.0
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = -3
Query: 534 RSLPSLQKCHSHEEANDALQGYRVTATQNRTSKRVELLLDSHKEVPPLSFKKKRLELTEH 355
R P+++K E ++ TQ +R++ LLD + P + K E+ E
Sbjct: 138 RRRPTMKKIQFDEHTERLMKEINDNKTQESNKERIQDLLDGKELKPIRTDDIKHQEVDES 197
Query: 354 QKEVRRAQQGRKRDNG 307
KEV + K D+G
Sbjct: 198 TKEVHVLDKEEKEDSG 213
>ref|NP_722763.1| CG31671-PA [Drosophila melanogaster] gi|22945437|gb|AAF51302.2|
CG31671-PA [Drosophila melanogaster]
Length = 1641
Score = 32.0 bits (71), Expect = 5.0
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
Frame = -3
Query: 534 RSLPSLQKCHSHEEANDALQGYRVTATQNRTSKR------VELLLDSHKEVPPLSFKKKR 373
R S K E+AN+ G R + ++NR +R + + SH+ + K+R
Sbjct: 1360 RESQSRSKDDQQEQANNGSNGSRQSESRNRDVERDRHDQQDQRSISSHRSSRDIVRVKER 1419
Query: 372 LELTEHQKEVRRAQ-------QGRKRD----NGG-----HGPGIRT 283
E HQ+ R+Q Q RKR+ GG HG G+ T
Sbjct: 1420 TEAELHQRSRERSQRLEELEAQQRKREKTSRRGGEERIRHGDGVET 1465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,114,091
Number of Sequences: 1393205
Number of extensions: 9394594
Number of successful extensions: 20165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20145
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
