Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000479A_C02 KMC000479A_c02
(769 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF27920.1|AF220204_1 unknown [Malus x domestica] 136 4e-31
ref|NP_564265.1| expressed protein; protein id: At1g26850.1, sup... 130 2e-29
pir||C86395 T2P11.4 protein - Arabidopsis thaliana gi|4262174|gb... 130 3e-29
ref|NP_193537.2| putative protein; protein id: At4g18030.1, supp... 119 4e-26
pir||T05089 hypothetical protein T6K21.210 - Arabidopsis thalian... 119 4e-26
>gb|AAF27920.1|AF220204_1 unknown [Malus x domestica]
Length = 608
Score = 136 bits (342), Expect = 4e-31
Identities = 63/73 (86%), Positives = 70/73 (95%)
Frame = -3
Query: 701 RCNIEDILLEMDRILRPEGAVIFRDEVDVLIKVKQIVGGMRWDTKMVDHEDGPLVPEKIL 522
+CN EDILLEMDRILRPEGAVIFRDEVDVLIKVK+IVGGMRWDTK+VDHEDGPLVPEK+L
Sbjct: 534 KCNWEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKLVDHEDGPLVPEKVL 593
Query: 521 IAVKQYWVADSNA 483
+AVKQYWV +S +
Sbjct: 594 VAVKQYWVGNSTS 606
>ref|NP_564265.1| expressed protein; protein id: At1g26850.1, supported by cDNA:
gi_14335101 [Arabidopsis thaliana]
gi|14335102|gb|AAK59830.1| At1g26850/T2P11_4
[Arabidopsis thaliana] gi|23308473|gb|AAN18206.1|
At1g26850/T2P11_4 [Arabidopsis thaliana]
Length = 616
Score = 130 bits (328), Expect = 2e-29
Identities = 61/77 (79%), Positives = 70/77 (90%)
Frame = -3
Query: 701 RCNIEDILLEMDRILRPEGAVIFRDEVDVLIKVKQIVGGMRWDTKMVDHEDGPLVPEKIL 522
+CN +DILLEMDRILRPEGAVI RD+VD LIKVK+I+ GMRWD K+VDHEDGPLVPEK+L
Sbjct: 542 KCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVL 601
Query: 521 IAVKQYWVADSNATSTH 471
IAVKQYWV +N+TSTH
Sbjct: 602 IAVKQYWV--TNSTSTH 616
>pir||C86395 T2P11.4 protein - Arabidopsis thaliana gi|4262174|gb|AAD14491.1|
9058
Length = 590
Score = 130 bits (326), Expect = 3e-29
Identities = 61/76 (80%), Positives = 69/76 (90%)
Frame = -3
Query: 698 CNIEDILLEMDRILRPEGAVIFRDEVDVLIKVKQIVGGMRWDTKMVDHEDGPLVPEKILI 519
CN +DILLEMDRILRPEGAVI RD+VD LIKVK+I+ GMRWD K+VDHEDGPLVPEK+LI
Sbjct: 517 CNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLI 576
Query: 518 AVKQYWVADSNATSTH 471
AVKQYWV +N+TSTH
Sbjct: 577 AVKQYWV--TNSTSTH 590
>ref|NP_193537.2| putative protein; protein id: At4g18030.1, supported by cDNA:
gi_15294145 [Arabidopsis thaliana]
gi|15294146|gb|AAK95250.1|AF410264_1 AT4g18030/T6K21_210
[Arabidopsis thaliana] gi|24797056|gb|AAN64540.1|
At4g18030/T6K21_210 [Arabidopsis thaliana]
Length = 621
Score = 119 bits (299), Expect = 4e-26
Identities = 55/75 (73%), Positives = 64/75 (85%)
Frame = -3
Query: 698 CNIEDILLEMDRILRPEGAVIFRDEVDVLIKVKQIVGGMRWDTKMVDHEDGPLVPEKILI 519
C +EDILLE DRILRPEG VIFRDEVDVL V++IV GMRWDTK++DHEDGPLVPEKIL+
Sbjct: 538 CKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILV 597
Query: 518 AVKQYWVADSNATST 474
A KQYWVA + ++
Sbjct: 598 ATKQYWVAGDDGNNS 612
>pir||T05089 hypothetical protein T6K21.210 - Arabidopsis thaliana
gi|2894612|emb|CAA17146.1| putative protein [Arabidopsis
thaliana] gi|7268555|emb|CAB78805.1| putative protein
[Arabidopsis thaliana]
Length = 629
Score = 119 bits (299), Expect = 4e-26
Identities = 55/75 (73%), Positives = 64/75 (85%)
Frame = -3
Query: 698 CNIEDILLEMDRILRPEGAVIFRDEVDVLIKVKQIVGGMRWDTKMVDHEDGPLVPEKILI 519
C +EDILLE DRILRPEG VIFRDEVDVL V++IV GMRWDTK++DHEDGPLVPEKIL+
Sbjct: 546 CKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILV 605
Query: 518 AVKQYWVADSNATST 474
A KQYWVA + ++
Sbjct: 606 ATKQYWVAGDDGNNS 620
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 639,548,622
Number of Sequences: 1393205
Number of extensions: 13503939
Number of successful extensions: 32594
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 31377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32580
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
