Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000478A_C02 KMC000478A_c02
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK25932.1|AF360222_1 unknown protein [Arabidopsis thaliana] 38 0.11
ref|NP_564664.1| expressed protein; protein id: At1g54710.1, sup... 38 0.11
pir||C96589 hypothetical protein T22H22.14 [imported] - Arabidop... 38 0.11
ref|NP_611214.1| CG14478-PB [Drosophila melanogaster] gi|2465441... 37 0.23
dbj|BAC03887.1| unnamed protein product [Homo sapiens] 35 0.68
>gb|AAK25932.1|AF360222_1 unknown protein [Arabidopsis thaliana]
Length = 927
Score = 38.1 bits (87), Expect = 0.11
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = -3
Query: 604 SNVLTEVVADDVNSSSSLRENAQLEEDGEDDEMLGGIFAFSEEG 473
+ +TE D S L +D EDD+MLGG+FAFSEEG
Sbjct: 891 NETVTETEHKDAPSDGKL-------DDDEDDDMLGGVFAFSEEG 927
>ref|NP_564664.1| expressed protein; protein id: At1g54710.1, supported by cDNA:
gi_13430619 [Arabidopsis thaliana]
gi|23297074|gb|AAN13084.1| unknown protein [Arabidopsis
thaliana]
Length = 927
Score = 38.1 bits (87), Expect = 0.11
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = -3
Query: 604 SNVLTEVVADDVNSSSSLRENAQLEEDGEDDEMLGGIFAFSEEG 473
+ +TE D S L +D EDD+MLGG+FAFSEEG
Sbjct: 891 NETVTETEHKDAPSDGKL-------DDDEDDDMLGGVFAFSEEG 927
>pir||C96589 hypothetical protein T22H22.14 [imported] - Arabidopsis thaliana
gi|3776567|gb|AAC64884.1| Strong similarity to F21B7.33
gi|2809264 from A. thaliana BAC gb|AC002560. EST
gb|N65119 comes from this gene. [Arabidopsis thaliana]
Length = 942
Score = 38.1 bits (87), Expect = 0.11
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = -3
Query: 604 SNVLTEVVADDVNSSSSLRENAQLEEDGEDDEMLGGIFAFSEEG 473
+ +TE D S L +D EDD+MLGG+FAFSEEG
Sbjct: 898 NETVTETEHKDAPSDGKL-------DDDEDDDMLGGVFAFSEEG 934
>ref|NP_611214.1| CG14478-PB [Drosophila melanogaster] gi|24654414|ref|NP_725678.1|
CG14478-PA [Drosophila melanogaster]
gi|7302784|gb|AAF57859.1| CG14478-PA [Drosophila
melanogaster] gi|21645229|gb|AAF57860.2| CG14478-PB
[Drosophila melanogaster]
Length = 512
Score = 37.0 bits (84), Expect = 0.23
Identities = 43/154 (27%), Positives = 63/154 (39%), Gaps = 2/154 (1%)
Frame = +3
Query: 183 HCSYLHKNLINDQLSTVNANSNPQPEFSKHRPQS*LTHE--NMNSNLHNVQGRETETEIA 356
H SY H Q PQP+ K +PQS L N NSN T +
Sbjct: 151 HISYHHHPYYQQQPQQAPP---PQPQPLKSQPQSHLPVHALNQNSNFSAASSSTGGTASS 207
Query: 357 N*ETNQSNILHICHFLFTVFTMLSYFPQMTS*ARSGGHQPSSEKANMPPSISSSSPSSSN 536
+ T QSN + + + + P ++ A + + A+ PS S+SS SSS+
Sbjct: 208 HAPTQQSNGSSVSPTIVSRVAAVGT-PSSSNIAAAANALLRASAASTAPSSSASSSSSSS 266
Query: 537 CAFSRRLLLLLTSSATTSVNTLLPSCSSVLQWPP 638
A S +SSA++S N C+ L+ P
Sbjct: 267 SASSSSSSSSSSSSASSSAN-----CAKKLKTEP 295
>dbj|BAC03887.1| unnamed protein product [Homo sapiens]
Length = 258
Score = 35.4 bits (80), Expect = 0.68
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +3
Query: 459 SGGHQPSSEKANMPPSISSSSPSSSNCAFS-RRLLLLLTSSATTSVNTLLPSCSS 620
S G PSS +N PS SSSSPSSS+ + S R +SS+T+S +T PS SS
Sbjct: 175 SSGSSPSS--SNSSPSSSSSSPSSSSSSPSPRSSSPSSSSSSTSSPSTSSPSSSS 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,730,097
Number of Sequences: 1393205
Number of extensions: 12833134
Number of successful extensions: 46612
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 39001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44581
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
