Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000473A_C01 KMC000473A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680598.1| similar to S-locus protein 4-like; protein id: ... 175 4e-43
gb|AAD03447.1| contains similarity to human PCF11p homolog (GB:A... 163 2e-39
gb|AAL57625.1| At1g66500/F28G11_6 [Arabidopsis thaliana] 75 7e-13
ref|NP_176823.1| hypothetical protein; protein id: At1g66500.1, ... 75 7e-13
dbj|BAA85453.1| S-locus protein 4 [Brassica rapa] 74 1e-12
>ref|NP_680598.1| similar to S-locus protein 4-like; protein id: At4g04885.1
[Arabidopsis thaliana]
Length = 831
Score = 175 bits (443), Expect = 4e-43
Identities = 82/127 (64%), Positives = 98/127 (76%)
Frame = -1
Query: 565 VSERMWLSGAEALGTESAXGFLPNDTVEEKKDDEELAVPADEDQNTCALCGEPFDEFYSD 386
VS MWLSGAEALG E+ GFLP + EKKDDE++AVPADEDQ +CALCGEPF++FYSD
Sbjct: 716 VSASMWLSGAEALGAEAVPGFLPTEPTTEKKDDEDMAVPADEDQTSCALCGEPFEDFYSD 775
Query: 385 ETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCRSESSVAPSDDFVLDEGGTTEEGG 206
ETEEWMY+GAVY+NAP +T +D+SQLGPI+HAKCR ES+ GG EEG
Sbjct: 776 ETEEWMYKGAVYMNAPEESTTDMDKSQLGPIVHAKCRPESN-----------GGDMEEGS 824
Query: 205 QRKRIRS 185
QRK++RS
Sbjct: 825 QRKKMRS 831
>gb|AAD03447.1| contains similarity to human PCF11p homolog (GB:AF046935)
[Arabidopsis thaliana]
Length = 827
Score = 163 bits (412), Expect = 2e-39
Identities = 72/101 (71%), Positives = 86/101 (84%)
Frame = -1
Query: 565 VSERMWLSGAEALGTESAXGFLPNDTVEEKKDDEELAVPADEDQNTCALCGEPFDEFYSD 386
VS MWLSGAEALG E+ GFLP + EKKDDE++AVPADEDQ +CALCGEPF++FYSD
Sbjct: 716 VSASMWLSGAEALGAEAVPGFLPTEPTTEKKDDEDMAVPADEDQTSCALCGEPFEDFYSD 775
Query: 385 ETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCRSESS 263
ETEEWMY+GAVY+NAP +T +D+SQLGPI+HAKCR ES+
Sbjct: 776 ETEEWMYKGAVYMNAPEESTTDMDKSQLGPIVHAKCRPESN 816
>gb|AAL57625.1| At1g66500/F28G11_6 [Arabidopsis thaliana]
Length = 416
Score = 74.7 bits (182), Expect = 7e-13
Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = -1
Query: 562 SERMWLSGAEALGTESAXGFLPNDTVEEKKDDE--ELAVPADEDQNTCALCGEPFDEFYS 389
S +WL A T F ++ KD+E +L VPADEDQ CALC EPF+EF+S
Sbjct: 302 SASLWLCAATGGETVEVASFGGEMQKKKGKDEEPKQLMVPADEDQKNCALCVEPFEEFFS 361
Query: 388 DETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCRSE 269
E ++WMY+ AVYL ++ G I+H KC E
Sbjct: 362 HEDDDWMYKDAVYL------------TKNGRIVHVKCMPE 389
>ref|NP_176823.1| hypothetical protein; protein id: At1g66500.1, supported by cDNA:
gi_18086322 [Arabidopsis thaliana]
gi|25404628|pir||F96690 hypothetical protein F28G11.6
[imported] - Arabidopsis thaliana
gi|12322272|gb|AAG51167.1|AC074025_17 hypothetical
protein [Arabidopsis thaliana]
Length = 416
Score = 74.7 bits (182), Expect = 7e-13
Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = -1
Query: 562 SERMWLSGAEALGTESAXGFLPNDTVEEKKDDE--ELAVPADEDQNTCALCGEPFDEFYS 389
S +WL A T F ++ KD+E +L VPADEDQ CALC EPF+EF+S
Sbjct: 302 SASLWLCAATGGETVEVASFGGEMQKKKGKDEEPKQLMVPADEDQKNCALCVEPFEEFFS 361
Query: 388 DETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCRSE 269
E ++WMY+ AVYL ++ G I+H KC E
Sbjct: 362 HEDDDWMYKDAVYL------------TKNGRIVHVKCMPE 389
>dbj|BAA85453.1| S-locus protein 4 [Brassica rapa]
Length = 413
Score = 73.9 bits (180), Expect = 1e-12
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = -1
Query: 553 MWLSGAEALGTESAX-GFLPNDTVEEKKDDEELAVPADEDQNTCALCGEPFDEFYSDETE 377
+WLS A E A F ++E++ ++ VPADE+Q CALC E +EF+S E +
Sbjct: 309 LWLSAATGAAIEGAKPAFGETQKMKEEEKQQQRNVPADENQKMCALCLESLEEFFSHEED 368
Query: 376 EWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCRSESSVAPS 251
+WMYR A YL+ NGT GP++H C E P+
Sbjct: 369 DWMYRDAAYLHM-NGT---------GPVVHVNCMPEPRKGPA 400
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,121,936
Number of Sequences: 1393205
Number of extensions: 10640115
Number of successful extensions: 35809
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 29635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32923
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
