Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000471A_C01 KMC000471A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_039984.1| UL50 [Human herpesvirus 5] gi|136931|sp|P16791|... 36 0.33
pir||T26767 hypothetical protein Y39G8B.b - Caenorhabditis elegans 33 2.8
ref|NP_377176.1| 400aa long conserved hypothetical protein [Sulf... 33 2.8
ref|NP_649497.1| CG14656-PA [Drosophila melanogaster] gi|7296815... 33 2.8
emb|CAC10094.2| related to SEN1 protein [Neurospora crassa] gi|2... 33 2.8
>ref|NP_039984.1| UL50 [Human herpesvirus 5] gi|136931|sp|P16791|UL50_HCMVA PROTEIN
UL50 gi|76570|pir||S09813 hypothetical protein UL50 -
human cytomegalovirus (strain AD169)
gi|330663|gb|AAA46004.1| HFLF4
gi|1780828|emb|CAA35409.1| HCMVUL50 [Human herpesvirus
5] gi|27808785|tpg|DAA00155.1| TPA: UL50 [Human
herpesvirus 5]
Length = 397
Score = 35.8 bits (81), Expect = 0.33
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -1
Query: 230 WRPISWWRGRLGP*GPVSGSW 168
W P SWWR R GP P SG W
Sbjct: 338 WAPSSWWRARSGPSRPQSGPW 358
>pir||T26767 hypothetical protein Y39G8B.b - Caenorhabditis elegans
Length = 437
Score = 32.7 bits (73), Expect = 2.8
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 105 KRKTKPKIERIHGRP----EKLSPPP*P*HRPSRA*PSSPPRNWPPSLPKVFIRFRRKEK 272
KRK KPK + H RP EK P P +P P+ P+ P PK + + K K
Sbjct: 287 KRKPKPKPKHKHNRPTGTAEKSKKPENPKPKPK---PNPKPKPKPKPKPKPKPKPKPKPK 343
Query: 273 MKKDPK 290
K PK
Sbjct: 344 HKPKPK 349
>ref|NP_377176.1| 400aa long conserved hypothetical protein [Sulfolobus tokodaii]
gi|15622293|dbj|BAB66285.1| 400aa long conserved
hypothetical protein [Sulfolobus tokodaii]
Length = 400
Score = 32.7 bits (73), Expect = 2.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 299 NLFFGIFFHLFFSPKPNKHLW-ETWRPISWWRGRL 198
N + G +FH+ P + +W E W P+S W L
Sbjct: 251 NSYLGNYFHIILFPSKYRSIWIEIWHPLSLWANEL 285
>ref|NP_649497.1| CG14656-PA [Drosophila melanogaster] gi|7296815|gb|AAF52091.1|
CG14656-PA [Drosophila melanogaster]
Length = 934
Score = 32.7 bits (73), Expect = 2.8
Identities = 17/48 (35%), Positives = 27/48 (55%)
Frame = +2
Query: 89 NTNIGKEKNKTQNRTDSWTSGEAVTSSMTLTPALKGLAFLSTKKLASK 232
N+N K +K + R TSG AV+SS+ + PA + ST++ S+
Sbjct: 56 NSNRNKSHHKNEKRNAPATSGPAVSSSVDVVPATSTASATSTRRSRSQ 103
>emb|CAC10094.2| related to SEN1 protein [Neurospora crassa]
gi|28926448|gb|EAA35422.1| related to SEN1 protein [MIPS]
[Neurospora crassa]
Length = 2126
Score = 32.7 bits (73), Expect = 2.8
Identities = 14/32 (43%), Positives = 20/32 (61%)
Frame = +3
Query: 144 RPEKLSPPP*P*HRPSRA*PSSPPRNWPPSLP 239
RP++ +PPP P H+ R P+ P R PP+ P
Sbjct: 2048 RPQQGAPPPYPGHQQQRQPPAGPSRPGPPTGP 2079
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,575,800
Number of Sequences: 1393205
Number of extensions: 11675996
Number of successful extensions: 37544
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 34039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37243
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
