Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000470A_C01 KMC000470A_c01
(694 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64425.1| unknown [Arabidopsis thaliana] 33 3.8
ref|NP_567942.1| Expressed protein; protein id: At4g33925.1, sup... 33 3.8
>gb|AAM64425.1| unknown [Arabidopsis thaliana]
Length = 132
Score = 33.1 bits (74), Expect = 3.8
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 692 IVDQKGVKMISGHPNGRFIFQFYANIIEQIGYL 594
I+D++GVK ISG P+GR IFQ ++ YL
Sbjct: 43 IIDKRGVKKISGLPSGRSIFQVVGESQKREEYL 75
>ref|NP_567942.1| Expressed protein; protein id: At4g33925.1, supported by cDNA:
24360. [Arabidopsis thaliana]
Length = 132
Score = 33.1 bits (74), Expect = 3.8
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 692 IVDQKGVKMISGHPNGRFIFQFYANIIEQIGYL 594
I+D++GVK ISG P+GR IFQ ++ YL
Sbjct: 43 IIDKRGVKKISGLPSGRSIFQVVGESQKREEYL 75
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,557,869
Number of Sequences: 1393205
Number of extensions: 12103018
Number of successful extensions: 24417
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24415
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
