Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000466A_C01 KMC000466A_c01
(697 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00488 hypothetical protein 184 - carrot (fragment) gi|3551... 127 2e-28
ref|NP_671774.1| unknown protein; protein id: At2g04235.1 [Arabi... 105 6e-22
dbj|BAC42553.1| unknown protein [Arabidopsis thaliana] gi|283728... 105 6e-22
ref|XP_130428.1| RIKEN cDNA 5730505K17 [Mus musculus] gi|2503133... 32 8.4
ref|XP_231560.1| similar to KIAA1793 protein [Homo sapiens] [Rat... 32 8.4
>pir||T00488 hypothetical protein 184 - carrot (fragment)
gi|3551249|dbj|BAA32823.1| 184 [Daucus carota]
Length = 774
Score = 127 bits (318), Expect = 2e-28
Identities = 65/149 (43%), Positives = 98/149 (65%)
Frame = -1
Query: 697 FLFVLNPHTXKKCLGQISLAQETQITSSLISNLLYVAEEVQLAQIEIRNLVHAKFYSRSV 518
F +V + +K + S+A+ETQI+S L+ ++L V EEVQLA++E+RNL+ F S SV
Sbjct: 625 FAYVFDAEPTRKYVSSRSVAEETQISSLLLGSMLDVVEEVQLARLELRNLIQCTFCSESV 684
Query: 517 HQLDLQLLFIDFCSGKKVQVTLDMTCLKCGAYPVEVLPCQIHDPSASGEQKPLPASLVDK 338
QLDLQL F++ SGK+ T D++CLK G YP E++P + P A +QK ++ +
Sbjct: 685 EQLDLQLYFLNLKSGKRATFTFDLSCLKRGVYPSEIIPSIMKAP-ADEQQKFCSKQILSE 743
Query: 337 ITTAAVNERVGFSRIIRLCKCISKAVQDS 251
+ A + RVG+ RIIR C+CIS+A++ S
Sbjct: 744 VRAAVQSLRVGYLRIIRACRCISQAIEAS 772
>ref|NP_671774.1| unknown protein; protein id: At2g04235.1 [Arabidopsis thaliana]
Length = 1226
Score = 105 bits (262), Expect = 6e-22
Identities = 59/133 (44%), Positives = 81/133 (60%)
Frame = -1
Query: 655 GQISLAQETQITSSLISNLLYVAEEVQLAQIEIRNLVHAKFYSRSVHQLDLQLLFIDFCS 476
G +L + TQ TS L+ NLL VAEE LAQ+ I NLV F S S QL LQ+ F+D +
Sbjct: 1090 GSNTLLEITQKTSLLLHNLLDVAEEFHLAQMNIPNLVQGNFDSPSAEQLHLQISFLDCTN 1149
Query: 475 GKKVQVTLDMTCLKCGAYPVEVLPCQIHDPSASGEQKPLPASLVDKITTAAVNERVGFSR 296
+K+ V LD+TCL G YP +V+PC+ S + + L +I + + VG+ R
Sbjct: 1150 LRKLSVILDVTCLIHGKYPSDVVPCEFRKVSGTKRDGVVSKQLKKEIESTIDDVGVGYPR 1209
Query: 295 IIRLCKCISKAVQ 257
I+RLC+CISKA+Q
Sbjct: 1210 ILRLCRCISKALQ 1222
>dbj|BAC42553.1| unknown protein [Arabidopsis thaliana] gi|28372874|gb|AAO39919.1|
At2g04235 [Arabidopsis thaliana]
Length = 158
Score = 105 bits (262), Expect = 6e-22
Identities = 59/133 (44%), Positives = 81/133 (60%)
Frame = -1
Query: 655 GQISLAQETQITSSLISNLLYVAEEVQLAQIEIRNLVHAKFYSRSVHQLDLQLLFIDFCS 476
G +L + TQ TS L+ NLL VAEE LAQ+ I NLV F S S QL LQ+ F+D +
Sbjct: 22 GSNTLLEITQKTSLLLHNLLDVAEEFHLAQMNIPNLVQGNFDSPSAEQLHLQISFLDCTN 81
Query: 475 GKKVQVTLDMTCLKCGAYPVEVLPCQIHDPSASGEQKPLPASLVDKITTAAVNERVGFSR 296
+K+ V LD+TCL G YP +V+PC+ S + + L +I + + VG+ R
Sbjct: 82 LRKLSVILDVTCLIHGKYPSDVVPCEFRKVSGTKRDGVVSKQLKKEIESTIDDVGVGYPR 141
Query: 295 IIRLCKCISKAVQ 257
I+RLC+CISKA+Q
Sbjct: 142 ILRLCRCISKALQ 154
>ref|XP_130428.1| RIKEN cDNA 5730505K17 [Mus musculus] gi|25031334|ref|XP_203938.1|
RIKEN cDNA 5730505K17 [Mus musculus]
gi|12857151|dbj|BAB30909.1| unnamed protein product [Mus
musculus]
Length = 331
Score = 32.0 bits (71), Expect = 8.4
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = -1
Query: 667 KKCLGQISLAQETQITSSLISNLLYVAEEVQLAQIEIRN--LVHAKFYSRSVHQLDLQLL 494
KKC Q + Q Q S ++++ + EE++ + N L+H +V+ +L+LL
Sbjct: 208 KKCTAQHQVPQMLQELSLVVNHCRLLGEEIEFLKRWGPNYSLMHI-----NVNNTELRLL 262
Query: 493 FIDFCSGKKVQVTLDMTCLKCGAYPVEVLPCQIHD 389
F + K ++TL + YP+ LP IH+
Sbjct: 263 FSSCAAFAKFEITLSPS----AHYPLVPLPFTIHN 293
>ref|XP_231560.1| similar to KIAA1793 protein [Homo sapiens] [Rattus norvegicus]
Length = 1154
Score = 32.0 bits (71), Expect = 8.4
Identities = 23/66 (34%), Positives = 33/66 (49%)
Frame = -1
Query: 607 SNLLYVAEEVQLAQIEIRNLVHAKFYSRSVHQLDLQLLFIDFCSGKKVQVTLDMTCLKCG 428
S L + +E+ LAQ EI NL A S + H+ D+ L D C ++Q LD G
Sbjct: 121 SELKEIEQELHLAQAEIHNLRQAAADSATEHESDIASLQDDLC---RLQNELDDMERIRG 177
Query: 427 AYPVEV 410
Y +E+
Sbjct: 178 DYEMEI 183
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,380,036
Number of Sequences: 1393205
Number of extensions: 10528434
Number of successful extensions: 21184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21182
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
