Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000464A_C01 KMC000464A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T16011 hypothetical protein F09F7.3 - Caenorhabditis elegans 127 1e-28
ref|NP_498192.2| RNA polymerase beta subunit (129.1 kD) [Caenorh... 127 1e-28
ref|XP_125795.1| RIKEN cDNA 2700078H01 [Mus musculus] 122 4e-27
gb|AAH44796.1| Similar to RNA polymerase III subunit RPC2 [Mus m... 122 4e-27
gb|AAH46238.1| RNA polymerase III subunit RPC2 [Homo sapiens] 120 1e-26
>pir||T16011 hypothetical protein F09F7.3 - Caenorhabditis elegans
Length = 1207
Score = 127 bits (318), Expect = 1e-28
Identities = 69/120 (57%), Positives = 81/120 (67%), Gaps = 3/120 (2%)
Frame = -3
Query: 582 MHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASMLIFERLMLFSDPF---A 412
MHAR GPR +L RQPTEG++R GGLR+GEMERDCLIAYGASML+ ERLM+ SD F
Sbjct: 1094 MHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVDV 1153
Query: 411 SSGL*IVWVVRILQL*VENWCLSITLRMETRFPNMKLPYACKLLIQELQSMNIVPRLKLA 232
+G ++ + WC R N+K+PYACKLL QELQSMNIVPRL LA
Sbjct: 1154 CTGCGVIG--------SKGWCQK--CRSSKSMANIKIPYACKLLFQELQSMNIVPRLDLA 1203
>ref|NP_498192.2| RNA polymerase beta subunit (129.1 kD) [Caenorhabditis elegans]
gi|20451233|gb|AAA50695.2| Hypothetical protein F09F7.3
[Caenorhabditis elegans]
Length = 1154
Score = 127 bits (318), Expect = 1e-28
Identities = 69/120 (57%), Positives = 81/120 (67%), Gaps = 3/120 (2%)
Frame = -3
Query: 582 MHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASMLIFERLMLFSDPF---A 412
MHAR GPR +L RQPTEG++R GGLR+GEMERDCLIAYGASML+ ERLM+ SD F
Sbjct: 1041 MHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVDV 1100
Query: 411 SSGL*IVWVVRILQL*VENWCLSITLRMETRFPNMKLPYACKLLIQELQSMNIVPRLKLA 232
+G ++ + WC R N+K+PYACKLL QELQSMNIVPRL LA
Sbjct: 1101 CTGCGVIG--------SKGWCQK--CRSSKSMANIKIPYACKLLFQELQSMNIVPRLDLA 1150
>ref|XP_125795.1| RIKEN cDNA 2700078H01 [Mus musculus]
Length = 445
Score = 122 bits (305), Expect = 4e-27
Identities = 67/122 (54%), Positives = 79/122 (63%), Gaps = 5/122 (4%)
Frame = -3
Query: 582 MHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASMLIFERLMLFSDPF---- 415
MHAR GPR L RQPTEG++R+GGLR+GEMERDCLI YGASML+ ERLM+ SD F
Sbjct: 332 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDV 391
Query: 414 -ASSGL*IVWVVRILQL*VENWCLSITLRMETRFPNMKLPYACKLLIQELQSMNIVPRLK 238
GL L WC + ++++PYACKLL QELQSMNI+PRLK
Sbjct: 392 CGQCGL----------LGYSGWC--HYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 439
Query: 237 LA 232
LA
Sbjct: 440 LA 441
>gb|AAH44796.1| Similar to RNA polymerase III subunit RPC2 [Mus musculus]
Length = 205
Score = 122 bits (305), Expect = 4e-27
Identities = 67/122 (54%), Positives = 79/122 (63%), Gaps = 5/122 (4%)
Frame = -3
Query: 582 MHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASMLIFERLMLFSDPF---- 415
MHAR GPR L RQPTEG++R+GGLR+GEMERDCLI YGASML+ ERLM+ SD F
Sbjct: 92 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDV 151
Query: 414 -ASSGL*IVWVVRILQL*VENWCLSITLRMETRFPNMKLPYACKLLIQELQSMNIVPRLK 238
GL L WC + ++++PYACKLL QELQSMNI+PRLK
Sbjct: 152 CGQCGL----------LGYSGWC--HYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 199
Query: 237 LA 232
LA
Sbjct: 200 LA 201
>gb|AAH46238.1| RNA polymerase III subunit RPC2 [Homo sapiens]
Length = 1133
Score = 120 bits (302), Expect = 1e-26
Identities = 66/122 (54%), Positives = 79/122 (64%), Gaps = 5/122 (4%)
Frame = -3
Query: 582 MHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASMLIFERLMLFSDPF---- 415
MHAR GPR L RQPTEG++R+GGLR+GEMERDCLI YGASML+ ERLM+ SD F
Sbjct: 1020 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDV 1079
Query: 414 -ASSGL*IVWVVRILQL*VENWCLSITLRMETRFPNMKLPYACKLLIQELQSMNIVPRLK 238
GL L WC + ++++PYACKLL QELQSMNI+PRLK
Sbjct: 1080 CGQCGL----------LGYSGWC--HYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127
Query: 237 LA 232
L+
Sbjct: 1128 LS 1129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,172,884
Number of Sequences: 1393205
Number of extensions: 9043019
Number of successful extensions: 18642
Number of sequences better than 10.0: 443
Number of HSP's better than 10.0 without gapping: 18103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18530
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
