Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000462A_C01 KMC000462A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T28634 variant-specific surface protein 7 - malaria parasit... 32 6.8
ref|NP_616994.1| conserved hypothetical protein [Methanosarcina ... 31 8.9
gb|EAA21723.1| asparagine-rich protein [Plasmodium yoelii yoelii] 31 8.9
>pir||T28634 variant-specific surface protein 7 - malaria parasite (Plasmodium
falciparum) gi|886380|gb|AAA75399.1| variant-specific
surface protein
Length = 2182
Score = 31.6 bits (70), Expect = 6.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 540 LYISKMREWASQTGKQTEELGEAVISKPGKSATELQQSA 424
LY+ + +WAS+ G +T E+ S P +S +E ++A
Sbjct: 912 LYVGGLSQWASRGGDETTEVSSEATSAPSQSESEKLRTA 950
>ref|NP_616994.1| conserved hypothetical protein [Methanosarcina acetivorans str.
C2A] gi|19915998|gb|AAM05474.1| conserved hypothetical
protein [Methanosarcina acetivorans str. C2A]
Length = 498
Score = 31.2 bits (69), Expect = 8.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 398 SLIVNPNSRALCCNSVADLPGFEMTASPNSSVCFPVWDAHS 520
+++V +SR +CC +PG E N S C+P W +S
Sbjct: 304 AVVVETSSRKVCCRY--PMPGVEALWQTNHSNCYPGWMGYS 342
>gb|EAA21723.1| asparagine-rich protein [Plasmodium yoelii yoelii]
Length = 881
Score = 31.2 bits (69), Expect = 8.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 368 CNHQQLAFAPSLIVNPNSRALCCNSVADLPGFEMTASPNSSVCFPVWDAHS 520
CNH+ + ++P NS L S A+L +M N+++C P++D ++
Sbjct: 37 CNHRDILYSPENSEGKNSSNLE-ESEAELLPLKMEMESNNNICNPIYDENN 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,863,496
Number of Sequences: 1393205
Number of extensions: 9711409
Number of successful extensions: 25720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25720
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
