Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000461A_C01 KMC000461A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51804 respiratory burst oxidase protein D [imported] - Ara... 179 3e-44
ref|NP_199602.1| respiratory burst oxidase protein; protein id: ... 179 3e-44
dbj|BAB70751.1| respiratory burst oxidase homolog [Solanum tuber... 178 4e-44
gb|AAC39476.1| respiratory burst oxidase protein B [Arabidopsis ... 177 6e-44
pir||B86223 hypothetical protein [imported] - Arabidopsis thalia... 177 6e-44
>pir||T51804 respiratory burst oxidase protein D [imported] - Arabidopsis thaliana
gi|3242789|gb|AAC39479.1| respiratory burst oxidase
protein D [Arabidopsis thaliana]
Length = 921
Score = 179 bits (453), Expect = 3e-44
Identities = 81/106 (76%), Positives = 94/106 (88%)
Frame = -2
Query: 552 DGLIELHNYCTSVYEEGDARSALITMLQSLPHAKSGVDIVSGTRVKTHFAKPKWRTVFKP 373
+G+IELHNYCTSVYEEGDAR ALI MLQSL HAK+GVD+VSGTRVK+HFAKP WR V+K
Sbjct: 816 EGIIELHNYCTSVYEEGDARVALIAMLQSLQHAKNGVDVVSGTRVKSHFAKPNWRQVYKK 875
Query: 372 AALKHPGKTVGVFYCGAQGLVGELKRLSLDFSRKTTTKFEFHKENF 235
A++HPGK +GVFYCG G++ ELK L+LDFSRKTTTKF+FHKENF
Sbjct: 876 IAVQHPGKRIGVFYCGMPGMIKELKNLALDFSRKTTTKFDFHKENF 921
>ref|NP_199602.1| respiratory burst oxidase protein; protein id: At5g47910.1, supported
by cDNA: gi_15983500, supported by cDNA: gi_3242788
[Arabidopsis thaliana] gi|10177927|dbj|BAB11338.1|
respiratory burst oxidase protein [Arabidopsis thaliana]
gi|15983501|gb|AAL11618.1|AF424625_1 AT5g47910/MCA23_25
[Arabidopsis thaliana] gi|27363296|gb|AAO11567.1|
At5g47910/MCA23_25 [Arabidopsis thaliana]
Length = 921
Score = 179 bits (453), Expect = 3e-44
Identities = 81/106 (76%), Positives = 94/106 (88%)
Frame = -2
Query: 552 DGLIELHNYCTSVYEEGDARSALITMLQSLPHAKSGVDIVSGTRVKTHFAKPKWRTVFKP 373
+G+IELHNYCTSVYEEGDAR ALI MLQSL HAK+GVD+VSGTRVK+HFAKP WR V+K
Sbjct: 816 EGIIELHNYCTSVYEEGDARVALIAMLQSLQHAKNGVDVVSGTRVKSHFAKPNWRQVYKK 875
Query: 372 AALKHPGKTVGVFYCGAQGLVGELKRLSLDFSRKTTTKFEFHKENF 235
A++HPGK +GVFYCG G++ ELK L+LDFSRKTTTKF+FHKENF
Sbjct: 876 IAVQHPGKRIGVFYCGMPGMIKELKNLALDFSRKTTTKFDFHKENF 921
>dbj|BAB70751.1| respiratory burst oxidase homolog [Solanum tuberosum]
Length = 867
Score = 178 bits (451), Expect = 4e-44
Identities = 84/106 (79%), Positives = 91/106 (85%)
Frame = -2
Query: 552 DGLIELHNYCTSVYEEGDARSALITMLQSLPHAKSGVDIVSGTRVKTHFAKPKWRTVFKP 373
+GLIELHNYCTSVYEEGDARSALITMLQS+ AKSGVDIVSGTRVKTHFA+P WR VFK
Sbjct: 762 EGLIELHNYCTSVYEEGDARSALITMLQSIQQAKSGVDIVSGTRVKTHFARPNWRQVFKR 821
Query: 372 AALKHPGKTVGVFYCGAQGLVGELKRLSLDFSRKTTTKFEFHKENF 235
+ HP + +GVFYCG QGLVGEL+ LS DFS KT TKFEFHKENF
Sbjct: 822 VTINHPDQRIGVFYCGPQGLVGELRHLSQDFSHKTGTKFEFHKENF 867
>gb|AAC39476.1| respiratory burst oxidase protein B [Arabidopsis thaliana]
Length = 843
Score = 177 bits (450), Expect = 6e-44
Identities = 83/106 (78%), Positives = 94/106 (88%)
Frame = -2
Query: 552 DGLIELHNYCTSVYEEGDARSALITMLQSLPHAKSGVDIVSGTRVKTHFAKPKWRTVFKP 373
+G+IELHNYCTSVYEEGDARSALITMLQSL HAKSG+DIVSGTRV+THFA+P WR+VFK
Sbjct: 738 EGMIELHNYCTSVYEEGDARSALITMLQSLHHAKSGIDIVSGTRVRTHFARPNWRSVFKH 797
Query: 372 AALKHPGKTVGVFYCGAQGLVGELKRLSLDFSRKTTTKFEFHKENF 235
A+ H + VGVFYCG ++GELKRL+ DFSRKTTTKFEFHKENF
Sbjct: 798 VAVNHVNQRVGVFYCGNTCIIGELKRLAQDFSRKTTTKFEFHKENF 843
>pir||B86223 hypothetical protein [imported] - Arabidopsis thaliana
gi|2342676|gb|AAB70398.1| Strong similarity to Oryza
NADPH oxidase (gb|X93301). [Arabidopsis thaliana]
Length = 578
Score = 177 bits (450), Expect = 6e-44
Identities = 83/106 (78%), Positives = 94/106 (88%)
Frame = -2
Query: 552 DGLIELHNYCTSVYEEGDARSALITMLQSLPHAKSGVDIVSGTRVKTHFAKPKWRTVFKP 373
+G+IELHNYCTSVYEEGDARSALITMLQSL HAKSG+DIVSGTRV+THFA+P WR+VFK
Sbjct: 473 EGMIELHNYCTSVYEEGDARSALITMLQSLHHAKSGIDIVSGTRVRTHFARPNWRSVFKH 532
Query: 372 AALKHPGKTVGVFYCGAQGLVGELKRLSLDFSRKTTTKFEFHKENF 235
A+ H + VGVFYCG ++GELKRL+ DFSRKTTTKFEFHKENF
Sbjct: 533 VAVNHVNQRVGVFYCGNTCIIGELKRLAQDFSRKTTTKFEFHKENF 578
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,125,887
Number of Sequences: 1393205
Number of extensions: 8891026
Number of successful extensions: 18568
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 18127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18546
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
