Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000460A_C03 KMC000460A_c03
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P35100|CLPA_PEA ATP-dependent clp protease ATP-binding subuni... 143 1e-33
sp|P31542|CLAB_LYCES ATP-dependent clp protease ATP-binding subu... 134 9e-31
sp|P31541|CLAA_LYCES ATP-dependent clp protease ATP-binding subu... 132 4e-30
ref|NP_568746.1| ATP-dependent Clp protease ATP-binding subunit ... 130 1e-29
pir||T52292 endopeptidase Clp (EC 3.4.21.92) ATP-binding chain C... 130 1e-29
>sp|P35100|CLPA_PEA ATP-dependent clp protease ATP-binding subunit clpA homolog,
chloroplast precursor gi|419773|pir||S31164 endopeptidase
Clp (EC 3.4.21.-) ATP-binding chain, chloroplast
[similarity] - garden pea gi|169128|gb|AAA33680.1|
nuclear encoded precursor to chloroplast protein
Length = 922
Score = 143 bits (361), Expect = 1e-33
Identities = 74/86 (86%), Positives = 78/86 (90%)
Frame = -2
Query: 602 EIDLSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDAD 423
EI+L VTERF++RVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVD D
Sbjct: 839 EIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 898
Query: 422 SDGNVIVLNGSSDSGAPESLPEVLPV 345
SDG VIVLNGS SG PESLPE L +
Sbjct: 899 SDGKVIVLNGS--SGTPESLPEALSI 922
>sp|P31542|CLAB_LYCES ATP-dependent clp protease ATP-binding subunit clpA homolog CD4B,
chloroplast precursor gi|100190|pir||B35905 endopeptidase
Clp (EC 3.4.21.-) ATP-binding chain cd4B, chloroplast
[similarity] - tomato gi|170435|gb|AAA34161.1|
ATP-dependent protease (CD4B)
Length = 923
Score = 134 bits (337), Expect = 9e-31
Identities = 71/87 (81%), Positives = 76/87 (86%), Gaps = 1/87 (1%)
Frame = -2
Query: 602 EIDLSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDAD 423
EI+L VTERF++RVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKEGDSVIVD D
Sbjct: 839 EIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVD 898
Query: 422 SDGNVIVLNGSSDSGAP-ESLPEVLPV 345
SDGNV VLNGS SG P + PE +PV
Sbjct: 899 SDGNVTVLNGS--SGTPSDPAPEPIPV 923
>sp|P31541|CLAA_LYCES ATP-dependent clp protease ATP-binding subunit clpA homolog CD4A,
chloroplast precursor gi|100189|pir||A35905 endopeptidase
Clp (EC 3.4.21.-) ATP-binding chain cd4A, chloroplast
[similarity] - tomato gi|170433|gb|AAA34160.1|
ATP-dependent protease (CD4A)
Length = 926
Score = 132 bits (331), Expect = 4e-30
Identities = 71/87 (81%), Positives = 77/87 (87%), Gaps = 1/87 (1%)
Frame = -2
Query: 602 EIDLSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDAD 423
EI+L VTERF++RVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKEGDSVIVD D
Sbjct: 842 EIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVD 901
Query: 422 SDGNVIVLNGSSDSGAP-ESLPEVLPV 345
SDGNV VLNG+ SGAP +S PE + V
Sbjct: 902 SDGNVTVLNGT--SGAPSDSAPEPILV 926
>ref|NP_568746.1| ATP-dependent Clp protease ATP-binding subunit (ClpC1); protein id:
At5g50920.1, supported by cDNA: gi_20856955, supported by
cDNA: gi_2921157 [Arabidopsis thaliana]
gi|9758239|dbj|BAB08738.1| ATP-dependent Clp protease,
ATP-binding subunit [Arabidopsis thaliana]
gi|20856956|gb|AAM26692.1| AT5g50920/K3K7_7 [Arabidopsis
thaliana]
Length = 929
Score = 130 bits (328), Expect = 1e-29
Identities = 71/90 (78%), Positives = 75/90 (82%), Gaps = 4/90 (4%)
Frame = -2
Query: 602 EIDLSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDAD 423
EI+L VTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVD D
Sbjct: 841 EIELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 900
Query: 422 SDGNVIVLNGSSDSGAP----ESLPEVLPV 345
++GNV VLNG SG P E + LPV
Sbjct: 901 AEGNVTVLNGG--SGTPTTSLEEQEDSLPV 928
>pir||T52292 endopeptidase Clp (EC 3.4.21.92) ATP-binding chain C, chloroplast
[imported] - Arabidopsis thaliana
gi|2921158|gb|AAC04687.1| ClpC [Arabidopsis thaliana]
Length = 928
Score = 130 bits (328), Expect = 1e-29
Identities = 71/90 (78%), Positives = 75/90 (82%), Gaps = 4/90 (4%)
Frame = -2
Query: 602 EIDLSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDAD 423
EI+L VTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVD D
Sbjct: 840 EIELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 899
Query: 422 SDGNVIVLNGSSDSGAP----ESLPEVLPV 345
++GNV VLNG SG P E + LPV
Sbjct: 900 AEGNVTVLNGG--SGTPTTSLEEQEDSLPV 927
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,377,720
Number of Sequences: 1393205
Number of extensions: 9904943
Number of successful extensions: 25422
Number of sequences better than 10.0: 372
Number of HSP's better than 10.0 without gapping: 23990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25288
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
