Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000459A_C01 KMC000459A_c01
(706 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q42676|TKTC_CRAPL TRANSKETOLASE, CHLOROPLAST (TK) gi|1084440|... 169 4e-48
pir||T09541 transketolase (EC 2.2.1.1) TKT1 precursor, chloropla... 171 5e-48
dbj|BAB62078.1| transketolase [Polygonum tinctorium] 165 3e-47
pir||T09015 transketolase (EC 2.2.1.1) precursor, chloroplast - ... 163 3e-46
pir||G84888 probable transketolase precursor [imported] - Arabid... 160 3e-46
>sp|Q42676|TKTC_CRAPL TRANSKETOLASE, CHLOROPLAST (TK) gi|1084440|pir||S54300
transketolase (EC 2.2.1.1) 3 - Craterostigma
plantagineum (fragment) gi|664901|emb|CAA86607.1|
transketolase [Craterostigma plantagineum]
Length = 519
Score = 169 bits (428), Expect(2) = 4e-48
Identities = 86/102 (84%), Positives = 94/102 (91%)
Frame = -2
Query: 648 KFAAKAADDLRKEGKAVRVVSFVSWELFDEQSEAYKESVLPSAVSARVSIEAGSTFGWEK 469
+ AAKA + LRKEGK VRVVSFVSWELFDEQS+ YKESVLPS+V+ARVSIEAGSTFGW K
Sbjct: 418 EIAAKAGEVLRKEGKGVRVVSFVSWELFDEQSKEYKESVLPSSVTARVSIEAGSTFGWGK 477
Query: 468 IVGSKGKAIGIDHFGASAPAGRIYKEFGITKEAVIAAAKELI 343
IVGSKGKAIGID FGASAPAG+IY+EFGIT EAV+AAAKELI
Sbjct: 478 IVGSKGKAIGIDRFGASAPAGKIYEEFGITVEAVVAAAKELI 519
Score = 44.7 bits (104), Expect(2) = 4e-48
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -1
Query: 706 DNSTGNKPDVILIGTGSELEICCQS 632
DNS+GNKPDVILIGTGSELEI ++
Sbjct: 399 DNSSGNKPDVILIGTGSELEIAAKA 423
>pir||T09541 transketolase (EC 2.2.1.1) TKT1 precursor, chloroplast [validated]
- pepper gi|3559814|emb|CAA75777.1| transketolase 1
[Capsicum annuum]
Length = 744
Score = 171 bits (433), Expect(2) = 5e-48
Identities = 86/101 (85%), Positives = 94/101 (92%)
Frame = -2
Query: 648 KFAAKAADDLRKEGKAVRVVSFVSWELFDEQSEAYKESVLPSAVSARVSIEAGSTFGWEK 469
+ A KAAD+LRKEGKAVRVVS VSWELFDEQS YKESVLP+AV+ARVSIEAGSTFGWEK
Sbjct: 643 EIAVKAADELRKEGKAVRVVSLVSWELFDEQSAEYKESVLPAAVTARVSIEAGSTFGWEK 702
Query: 468 IVGSKGKAIGIDHFGASAPAGRIYKEFGITKEAVIAAAKEL 346
IVGSKGKAIGID FGASAPAG+IYKE+GIT EAVIAAAK++
Sbjct: 703 IVGSKGKAIGIDRFGASAPAGKIYKEYGITAEAVIAAAKQV 743
Score = 42.4 bits (98), Expect(2) = 5e-48
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = -1
Query: 706 DNSTGNKPDVILIGTGSELEICCQS 632
DNS+GN PDVILIGTGSELEI ++
Sbjct: 624 DNSSGNNPDVILIGTGSELEIAVKA 648
>dbj|BAB62078.1| transketolase [Polygonum tinctorium]
Length = 620
Score = 165 bits (417), Expect(2) = 3e-47
Identities = 83/101 (82%), Positives = 91/101 (89%)
Frame = -2
Query: 648 KFAAKAADDLRKEGKAVRVVSFVSWELFDEQSEAYKESVLPSAVSARVSIEAGSTFGWEK 469
+ AAKA D+LRK GKAVRVVSFV WELF+EQS+ YKESVLP+AV+ARVSIEAGSTFGWEK
Sbjct: 519 EIAAKAGDELRKAGKAVRVVSFVCWELFEEQSDEYKESVLPAAVTARVSIEAGSTFGWEK 578
Query: 468 IVGSKGKAIGIDHFGASAPAGRIYKEFGITKEAVIAAAKEL 346
IVGSKGKAIGID FGASAPAGRIYKE+GIT EAVI AA +
Sbjct: 579 IVGSKGKAIGIDRFGASAPAGRIYKEYGITVEAVIEAANSV 619
Score = 46.2 bits (108), Expect(2) = 3e-47
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = -1
Query: 706 DNSTGNKPDVILIGTGSELEICCQS 632
DNSTGNKPDVILIGTGSELEI ++
Sbjct: 500 DNSTGNKPDVILIGTGSELEIAAKA 524
>pir||T09015 transketolase (EC 2.2.1.1) precursor, chloroplast - spinach
gi|2529342|gb|AAD10219.1| transketolase [Spinacia
oleracea]
Length = 741
Score = 163 bits (412), Expect(2) = 3e-46
Identities = 81/101 (80%), Positives = 92/101 (90%)
Frame = -2
Query: 648 KFAAKAADDLRKEGKAVRVVSFVSWELFDEQSEAYKESVLPSAVSARVSIEAGSTFGWEK 469
+ AAKA D+LRKEGKAVRVVSFVSWELF++QS+ YKESVLPS V+ARVSIEAGSTFGW K
Sbjct: 640 EIAAKAGDELRKEGKAVRVVSFVSWELFEKQSDEYKESVLPSDVTARVSIEAGSTFGWHK 699
Query: 468 IVGSKGKAIGIDHFGASAPAGRIYKEFGITKEAVIAAAKEL 346
IVGSKGKAIGID FGASAPAG+IY+E+GIT EAV+ AAK +
Sbjct: 700 IVGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAKSV 740
Score = 44.7 bits (104), Expect(2) = 3e-46
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -1
Query: 706 DNSTGNKPDVILIGTGSELEICCQS 632
DNS+GNKPDVILIGTGSELEI ++
Sbjct: 621 DNSSGNKPDVILIGTGSELEIAAKA 645
>pir||G84888 probable transketolase precursor [imported] - Arabidopsis thaliana
Length = 741
Score = 160 bits (404), Expect(2) = 3e-46
Identities = 80/102 (78%), Positives = 92/102 (89%)
Frame = -2
Query: 648 KFAAKAADDLRKEGKAVRVVSFVSWELFDEQSEAYKESVLPSAVSARVSIEAGSTFGWEK 469
+ AA+AA+ LR++GK+VRVVSFV WELFDEQS+AYKESVLPS VSARVSIEAGSTFGW K
Sbjct: 640 EIAAQAAEKLREQGKSVRVVSFVCWELFDEQSDAYKESVLPSDVSARVSIEAGSTFGWGK 699
Query: 468 IVGSKGKAIGIDHFGASAPAGRIYKEFGITKEAVIAAAKELI 343
IVG KGK+IGID FGASAPAG++YKEFGIT EA++ AAK LI
Sbjct: 700 IVGGKGKSIGIDTFGASAPAGKLYKEFGITIEAMVEAAKSLI 741
Score = 47.8 bits (112), Expect(2) = 3e-46
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -1
Query: 706 DNSTGNKPDVILIGTGSELEICCQS 632
DNSTGNKPDVILIGTGSELEI Q+
Sbjct: 621 DNSTGNKPDVILIGTGSELEIAAQA 645
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,156,902
Number of Sequences: 1393205
Number of extensions: 11403175
Number of successful extensions: 27999
Number of sequences better than 10.0: 219
Number of HSP's better than 10.0 without gapping: 27054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27927
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
