Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000457A_C01 KMC000457A_c01
(724 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL69492.1| unknown protein [Arabidopsis thaliana] 84 3e-15
ref|NP_196810.1| putative protein; protein id: At5g13060.1 [Arab... 84 3e-15
ref|XP_236481.1| similar to KIAA1417 protein [Homo sapiens] [Rat... 42 0.007
gb|AAF00643.1|AC009540_20 unknown protein [Arabidopsis thaliana]... 41 0.015
ref|NP_566212.1| expressed protein; protein id: At3g03740.1, sup... 41 0.015
>gb|AAL69492.1| unknown protein [Arabidopsis thaliana]
Length = 736
Score = 83.6 bits (205), Expect = 3e-15
Identities = 40/75 (53%), Positives = 54/75 (71%)
Frame = -3
Query: 722 LKRLCEYTIAQDISLENVSCMYELSEAFNAISLRHACILFILEQFHKLSERPGHSLLIQH 543
LKR CEYTIAQ+I L+N+ MYEL++ FNA +LR AC LF+LE F KLS + + ++
Sbjct: 652 LKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACTLFVLEHFTKLSSQLWFAKFVKQ 711
Query: 542 IIPDIRSYFVKALSK 498
IIP+IRSY L++
Sbjct: 712 IIPEIRSYMTDILTR 726
>ref|NP_196810.1| putative protein; protein id: At5g13060.1 [Arabidopsis thaliana]
gi|9955550|emb|CAC05434.1| putative protein [Arabidopsis
thaliana]
Length = 706
Score = 83.6 bits (205), Expect = 3e-15
Identities = 40/75 (53%), Positives = 54/75 (71%)
Frame = -3
Query: 722 LKRLCEYTIAQDISLENVSCMYELSEAFNAISLRHACILFILEQFHKLSERPGHSLLIQH 543
LKR CEYTIAQ+I L+N+ MYEL++ FNA +LR AC LF+LE F KLS + + ++
Sbjct: 622 LKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACTLFVLEHFTKLSSQLWFAKFVKQ 681
Query: 542 IIPDIRSYFVKALSK 498
IIP+IRSY L++
Sbjct: 682 IIPEIRSYMTDILTR 696
>ref|XP_236481.1| similar to KIAA1417 protein [Homo sapiens] [Rattus norvegicus]
Length = 1198
Score = 42.4 bits (98), Expect = 0.007
Identities = 19/71 (26%), Positives = 40/71 (55%)
Frame = -3
Query: 722 LKRLCEYTIAQDISLENVSCMYELSEAFNAISLRHACILFILEQFHKLSERPGHSLLIQH 543
LK +CE +A++++L+N + + E + +NA L+ +C+ FI L E +L +
Sbjct: 773 LKEMCEVALAENLTLKNAAMLLEFASMYNAEQLKLSCLQFIGLNMAALLEARSLDVLSED 832
Query: 542 IIPDIRSYFVK 510
++ D+ ++ K
Sbjct: 833 VLKDLSIFYRK 843
>gb|AAF00643.1|AC009540_20 unknown protein [Arabidopsis thaliana]
gi|13605821|gb|AAK32896.1|AF367309_1 AT3g03740/F20H23_23
[Arabidopsis thaliana] gi|16323324|gb|AAL15375.1|
AT3g03740/F20H23_23 [Arabidopsis thaliana]
Length = 465
Score = 41.2 bits (95), Expect = 0.015
Identities = 20/74 (27%), Positives = 41/74 (55%)
Frame = -3
Query: 722 LKRLCEYTIAQDISLENVSCMYELSEAFNAISLRHACILFILEQFHKLSERPGHSLLIQH 543
L +CE + +DIS+++V+ + L++ +NA +L+ C+ F E + G L +H
Sbjct: 316 LSLMCESVLCKDISVDSVANILALADRYNASALKSVCLKFAAENLIAVMRSDGFDYLREH 375
Query: 542 IIPDIRSYFVKALS 501
P ++S +K ++
Sbjct: 376 -CPSLQSELLKTVA 388
>ref|NP_566212.1| expressed protein; protein id: At3g03740.1, supported by cDNA:
101153. [Arabidopsis thaliana]
gi|21536509|gb|AAM60841.1| unknown [Arabidopsis
thaliana]
Length = 436
Score = 41.2 bits (95), Expect = 0.015
Identities = 20/74 (27%), Positives = 41/74 (55%)
Frame = -3
Query: 722 LKRLCEYTIAQDISLENVSCMYELSEAFNAISLRHACILFILEQFHKLSERPGHSLLIQH 543
L +CE + +DIS+++V+ + L++ +NA +L+ C+ F E + G L +H
Sbjct: 287 LSLMCESVLCKDISVDSVANILALADRYNASALKSVCLKFAAENLIAVMRSDGFDYLREH 346
Query: 542 IIPDIRSYFVKALS 501
P ++S +K ++
Sbjct: 347 -CPSLQSELLKTVA 359
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 611,570,528
Number of Sequences: 1393205
Number of extensions: 13410409
Number of successful extensions: 25988
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 25086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25984
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
