Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000454A_C01 KMC000454A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179917.1| unknown protein; protein id: At2g23360.1 [Arabi... 49 3e-05
ref|XP_234009.1| similar to cystin 1; congenital polycystic kidn... 35 0.55
ref|XP_215321.1| similar to butyrophilin homolog - mouse (fragme... 33 2.1
dbj|BAA89651.1| similar to GPJ of phage P2 [Wolbachia sp. wKue] 33 2.1
ref|NP_704997.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.7
>ref|NP_179917.1| unknown protein; protein id: At2g23360.1 [Arabidopsis thaliana]
gi|7486157|pir||T01125 hypothetical protein At2g23360
[imported] - Arabidopsis thaliana
gi|3242728|gb|AAC23780.1| unknown protein [Arabidopsis
thaliana]
Length = 886
Score = 49.3 bits (116), Expect = 3e-05
Identities = 39/98 (39%), Positives = 50/98 (50%), Gaps = 11/98 (11%)
Frame = -2
Query: 481 SLLDQMLAED----DTKGNVSKASDGNF---NPTTIPGIIEPLEKILSLNKVNKDQDDSA 323
SLLDQM AED ++K +A+D N N + IE LE+IL D+ +
Sbjct: 791 SLLDQMKAEDHNTGESKDQKPQAADKNGKGGNSSVYNETIEALEQILL-----SDKSKGS 845
Query: 322 SVNSLAIVPAKKG----SLWKKLLWKKKKSDNLKTPLP 221
N AIVP KK SLW+KLL + KK + K P P
Sbjct: 846 DSNCFAIVPQKKTGGVKSLWRKLLGRNKKGKSKKVPNP 883
>ref|XP_234009.1| similar to cystin 1; congenital polycystic kidneys; cystin cilia
associated protein [Mus musculus] [Rattus norvegicus]
Length = 298
Score = 35.0 bits (79), Expect = 0.55
Identities = 19/54 (35%), Positives = 27/54 (49%)
Frame = -2
Query: 526 DPNPAAPPFMYMKNRSLLDQMLAEDDTKGNVSKASDGNFNPTTIPGIIEPLEKI 365
DP PA PP + LLDQ+LAE + G + G P +P + P +K+
Sbjct: 203 DPRPATPPGGREETLRLLDQLLAESEVWGPQEQTPRG---PARLPPAVSPEKKV 253
>ref|XP_215321.1| similar to butyrophilin homolog - mouse (fragment) [Rattus
norvegicus]
Length = 105
Score = 33.1 bits (74), Expect = 2.1
Identities = 24/58 (41%), Positives = 30/58 (51%)
Frame = -3
Query: 420 METSIPPPFLVL*SPWKRFYL*TKLIKTRMTALLLILWPLYQLRREVCGRSYYGKRRK 247
M IP PF SPWK +L +I T M +LI +Y LRRE GR ++RK
Sbjct: 1 MAMVIPEPFFPQASPWKAAFL---VILTMMG--ILISGTIYLLRREHSGRLKVQQKRK 53
>dbj|BAA89651.1| similar to GPJ of phage P2 [Wolbachia sp. wKue]
Length = 266
Score = 33.1 bits (74), Expect = 2.1
Identities = 23/64 (35%), Positives = 38/64 (58%), Gaps = 5/64 (7%)
Frame = -2
Query: 394 PGIIEPL--EKILSLNK---VNKDQDDSASVNSLAIVPAKKGSLWKKLLWKKKKSDNLKT 230
P IIEPL E+I S K VN+D+ SA V S + + + W++LL +++ ++ +K+
Sbjct: 4 PNIIEPLNFEEIFSRMKEELVNRDETFSALVESDPAIKILEVAAWRELLLRQRINEAVKS 63
Query: 229 PLPK 218
L K
Sbjct: 64 NLLK 67
>ref|NP_704997.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615242|emb|CAD52232.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1672
Score = 32.7 bits (73), Expect = 2.7
Identities = 21/53 (39%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Frame = -1
Query: 284 KFVEEVIMEKEEKRQPEN------TTSEEHLTCSYIINCSVVQYST*TKEGNH 144
K +EE I+EK+E + EN T E+H YIINC ++ Y +EGN+
Sbjct: 1341 KLIEENILEKKENNEKENYIYTFQCTWEKH----YIINCLLILY---IEEGNN 1386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,581,622
Number of Sequences: 1393205
Number of extensions: 10845338
Number of successful extensions: 28603
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 27382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28590
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
