Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000450A_C01 KMC000450A_c01
(851 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173522.1| putative SPL1-related protein; protein id: At1g... 55 1e-06
emb|CAB56773.1| Spl1-Related2 protein [Arabidopsis thaliana] 55 1e-06
pir||H96793 unknown protein F14G6.18 [imported] - Arabidopsis th... 55 1e-06
pir||T52568 squamosa-promoter binding protein-like 3 [imported] ... 55 1e-06
gb|AAL69483.2| putative SPL1-related protein [Arabidopsis thaliana] 55 1e-06
>ref|NP_173522.1| putative SPL1-related protein; protein id: At1g20980.1 [Arabidopsis
thaliana] gi|25518705|pir||G86342 hypothetical protein
F9H16.3 - Arabidopsis thaliana
gi|4836890|gb|AAD30593.1|AC007369_3 Unknown protein
[Arabidopsis thaliana]
Length = 1035
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -2
Query: 832 PFIHSILAVAAVCVCVCVFFRGTPFVGSEGPFRWENLDYGTM 707
P IHS+LAVA VCVCVCVF P V F W LDYG++
Sbjct: 994 PIIHSMLAVATVCVCVCVFMHAFPIVRQGSHFSWGGLDYGSI 1035
>emb|CAB56773.1| Spl1-Related2 protein [Arabidopsis thaliana]
Length = 712
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -2
Query: 832 PFIHSILAVAAVCVCVCVFFRGTPFVGSEGPFRWENLDYGTM 707
P IHS+LAVA VCVCVCVF P V F W LDYG++
Sbjct: 671 PIIHSMLAVATVCVCVCVFMHAFPIVRQGSHFSWGGLDYGSI 712
>pir||H96793 unknown protein F14G6.18 [imported] - Arabidopsis thaliana
gi|12323976|gb|AAG51947.1|AC015450_8 unknown protein;
70902-74753 [Arabidopsis thaliana]
Length = 1020
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -2
Query: 832 PFIHSILAVAAVCVCVCVFFRGTPFVGSEGPFRWENLDYGTM 707
P IHS+LAVA VCVCVCVF P V F W LDYG++
Sbjct: 979 PIIHSMLAVATVCVCVCVFMHAFPMVRQGSHFSWGGLDYGSI 1020
>pir||T52568 squamosa-promoter binding protein-like 3 [imported] - Arabidopsis
thaliana (fragment) gi|6006429|emb|CAB56771.1|
SPL1-Related3 protein [Arabidopsis thaliana]
Length = 647
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -2
Query: 832 PFIHSILAVAAVCVCVCVFFRGTPFVGSEGPFRWENLDYGTM 707
P IHS+LAVA VCVCVCVF P V F W LDYG++
Sbjct: 606 PIIHSMLAVATVCVCVCVFMHAFPMVRQGSHFSWGGLDYGSI 647
>gb|AAL69483.2| putative SPL1-related protein [Arabidopsis thaliana]
Length = 314
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -2
Query: 832 PFIHSILAVAAVCVCVCVFFRGTPFVGSEGPFRWENLDYGTM 707
P IHS+LAVA VCVCVCVF P V F W LDYG++
Sbjct: 273 PIIHSMLAVATVCVCVCVFMHAFPIVRQGSHFSWGGLDYGSI 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 703,021,759
Number of Sequences: 1393205
Number of extensions: 14960986
Number of successful extensions: 34097
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 29904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32767
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44873636157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
