Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000448A_C03 KMC000448A_c03
(651 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194200.1| putative protein; protein id: At4g24690.1, supp... 120 2e-26
gb|AAM28274.1| PFE18 protein [Ananas comosus] 119 4e-26
ref|NP_011334.1| Putative zinc-finger transcription factor; Gts1... 33 2.6
ref|NP_646097.1| ABC transporter (ATP-binding protein) homolog~O... 33 3.3
ref|NP_371916.1| ABC transporter homolog [Staphylococcus aureus ... 33 3.3
>ref|NP_194200.1| putative protein; protein id: At4g24690.1, supported by cDNA:
gi_17065501 [Arabidopsis thaliana]
gi|7452446|pir||T05565 hypothetical protein F22K18.110 -
Arabidopsis thaliana gi|4220521|emb|CAA22994.1| putative
protein [Arabidopsis thaliana]
gi|7269320|emb|CAB79379.1| putative protein [Arabidopsis
thaliana] gi|17065502|gb|AAL32905.1| putative protein
[Arabidopsis thaliana] gi|22136162|gb|AAM91159.1|
putative protein [Arabidopsis thaliana]
gi|22655264|gb|AAM98222.1| unknown protein [Arabidopsis
thaliana]
Length = 704
Score = 120 bits (301), Expect = 2e-26
Identities = 59/86 (68%), Positives = 71/86 (81%)
Frame = -1
Query: 516 NPVEEALLKELDEMGFKQVDLNKEILRNNGYNLEQAIVDLCDESGWDPILEELKEMGFGD 337
N VE +LKEL+EMGFK++DLNKEILR+N YNLEQ++ LC S WDPILEEL+EMGF D
Sbjct: 616 NDVEITMLKELEEMGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCD 675
Query: 336 DDKNKKLLMKNHGSIMGVVMDLISKE 259
D NK+LL KN+GSI GVVMDL++ E
Sbjct: 676 DVTNKRLLKKNNGSIKGVVMDLLTGE 701
>gb|AAM28274.1| PFE18 protein [Ananas comosus]
Length = 309
Score = 119 bits (298), Expect = 4e-26
Identities = 58/102 (56%), Positives = 76/102 (73%)
Frame = -1
Query: 564 PQPRMAPSSSIGIGGNNPVEEALLKELDEMGFKQVDLNKEILRNNGYNLEQAIVDLCDES 385
PQP +P +N VEE +LKEL+EMGFKQ+DLNKE+LR N Y+L+Q++ DLC S
Sbjct: 205 PQPPPSPLLQ-AFNHDNSVEEVMLKELEEMGFKQIDLNKEVLRQNKYDLDQSVGDLCGFS 263
Query: 384 GWDPILEELKEMGFGDDDKNKKLLMKNHGSIMGVVMDLISKE 259
WDP+L EL+EMGF D ++NKK+L KN GSI VMDL+++E
Sbjct: 264 EWDPLLIELEEMGFADKERNKKMLEKNGGSIKRAVMDLVAEE 305
>ref|NP_011334.1| Putative zinc-finger transcription factor; Gts1p [Saccharomyces
cerevisiae] gi|1708067|sp|P40956|GTS1_YEAST GTS1 protein
(LSR1 protein) gi|2132329|pir||S58223 LSR1 protein -
yeast (Saccharomyces cerevisiae)
gi|929858|emb|CAA59801.1| LSR1 [Saccharomyces
cerevisiae] gi|1143566|emb|CAA62793.1| putative
transcription factor LSR1 [Saccharomyces cerevisiae]
gi|1322793|emb|CAA96893.1| ORF YGL181w [Saccharomyces
cerevisiae] gi|1480224|dbj|BAA06637.1| yeast
glycin-threonin/serine repeat protein [Saccharomyces
cerevisiae]
Length = 396
Score = 33.5 bits (75), Expect = 2.6
Identities = 15/26 (57%), Positives = 18/26 (68%)
Frame = -1
Query: 369 LEELKEMGFGDDDKNKKLLMKNHGSI 292
L ELK+MGFGD +KN L HG+I
Sbjct: 199 LAELKDMGFGDTNKNLDALSSAHGNI 224
>ref|NP_646097.1| ABC transporter (ATP-binding protein) homolog~ORFID:MW1280
[Staphylococcus aureus subsp. aureus MW2]
gi|21204448|dbj|BAB95145.1| MW1280 [Staphylococcus
aureus subsp. aureus MW2]
Length = 533
Score = 33.1 bits (74), Expect = 3.3
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -1
Query: 483 DEMGFKQVDLNKEILRNNGYNLEQAIVDLCDESGWDPILEELKEMGFGDDDKNKKLLMKN 304
DE G + +L E NG+N E +L G DP L + K ++ K K LL ++
Sbjct: 110 DEDGIRAAELEGEFAEMNGWNAEADAANLLSGLGIDPTLHDKKMAELENNQKIKVLLAQS 169
>ref|NP_371916.1| ABC transporter homolog [Staphylococcus aureus subsp. aureus Mu50]
gi|15926972|ref|NP_374505.1| SA1224 [Staphylococcus
aureus subsp. aureus N315] gi|25384331|pir||H89915
hypothetical protein SA1224 [imported] - Staphylococcus
aureus (strain N315) gi|13701189|dbj|BAB42484.1| SA1224
[Staphylococcus aureus subsp. aureus N315]
gi|14247163|dbj|BAB57554.1| ABC transporter homolog
[Staphylococcus aureus subsp. aureus Mu50]
Length = 533
Score = 33.1 bits (74), Expect = 3.3
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -1
Query: 483 DEMGFKQVDLNKEILRNNGYNLEQAIVDLCDESGWDPILEELKEMGFGDDDKNKKLLMKN 304
DE G + +L E NG+N E +L G DP L + K ++ K K LL ++
Sbjct: 110 DEDGIRAAELEGEFAEMNGWNAEADAANLLSGLGIDPTLHDKKMAELENNQKIKVLLAQS 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,515,910
Number of Sequences: 1393205
Number of extensions: 12451311
Number of successful extensions: 32184
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 30974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32160
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
