Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000446A_C01 KMC000446A_c01
(805 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187323.2| hypothetical protein; protein id: At3g06670.1, ... 44 0.002
gb|AAF63831.1| unknown protein [Arabidopsis thaliana] gi|1232190... 44 0.002
ref|XP_234807.1| similar to Predicted membrane protein [Plasmodi... 33 6.4
ref|XP_234118.1| similar to Predicted membrane protein [Plasmodi... 33 6.4
>ref|NP_187323.2| hypothetical protein; protein id: At3g06670.1, supported by cDNA:
gi_20453089 [Arabidopsis thaliana]
gi|20453090|gb|AAM19788.1| At3g06670/T8E24.10
[Arabidopsis thaliana] gi|27764910|gb|AAO23576.1|
At3g06670/T8E24.10 [Arabidopsis thaliana]
Length = 865
Score = 44.3 bits (103), Expect = 0.002
Identities = 23/49 (46%), Positives = 32/49 (64%)
Frame = -2
Query: 804 EDNHVEKQTAASKSFSDCLHATSDNIQLGGEDRPLVPPNSSPEMAVNGS 658
++NH + ++S+ H TSDN +L GE+ +V P SSPEMAVNGS
Sbjct: 823 DENHKDDGVSSSE------HETSDNGKLNGEESLVVAPKSSPEMAVNGS 865
>gb|AAF63831.1| unknown protein [Arabidopsis thaliana]
gi|12321909|gb|AAG50988.1|AC036106_1 hypothetical
protein; 8379-15114 [Arabidopsis thaliana]
Length = 863
Score = 44.3 bits (103), Expect = 0.002
Identities = 23/49 (46%), Positives = 32/49 (64%)
Frame = -2
Query: 804 EDNHVEKQTAASKSFSDCLHATSDNIQLGGEDRPLVPPNSSPEMAVNGS 658
++NH + ++S+ H TSDN +L GE+ +V P SSPEMAVNGS
Sbjct: 821 DENHKDDGVSSSE------HETSDNGKLNGEESLVVAPKSSPEMAVNGS 863
>ref|XP_234807.1| similar to Predicted membrane protein [Plasmodium yoelii yoelii]
[Rattus norvegicus]
Length = 560
Score = 32.7 bits (73), Expect = 6.4
Identities = 34/123 (27%), Positives = 57/123 (45%), Gaps = 3/123 (2%)
Frame = -3
Query: 443 TWVDLLLFPSALLFSALNLVVLDFV*PF*AIISLFSC---LQNFPLLS*FIYFCSFCKVS 273
T V L +FP+A++ S V+ + P ++S F L FP F + +S
Sbjct: 301 TAVVLSIFPAAVVLSIFPTAVVLSIFPAAVVLSTFPAAVILSTFPTAVVLSTFPTAVVLS 360
Query: 272 VVPMRGVLSLFPFSVI*THGRGCQYLALHRFYLFMLSLLWVVGVLVLYLCSEFLGLIFTN 93
+ P VLS+FP +VI + L++ + +LS+ VL + + LG+ T
Sbjct: 361 IFPAAVVLSIFPTAVILSTFPTAVVLSIFSAAV-VLSIFPAAVVLGTFPAAVVLGIFPTA 419
Query: 92 VVV 84
VV+
Sbjct: 420 VVL 422
>ref|XP_234118.1| similar to Predicted membrane protein [Plasmodium yoelii yoelii]
[Rattus norvegicus]
Length = 1026
Score = 32.7 bits (73), Expect = 6.4
Identities = 34/123 (27%), Positives = 57/123 (45%), Gaps = 3/123 (2%)
Frame = -3
Query: 443 TWVDLLLFPSALLFSALNLVVLDFV*PF*AIISLFSC---LQNFPLLS*FIYFCSFCKVS 273
T V L +FP+A++ S V+ + P ++S F L FP F + +S
Sbjct: 753 TAVVLSIFPAAVVLSIFPTAVVLSIFPAAVVLSTFPAAVILSTFPTAVVLSTFPTAVVLS 812
Query: 272 VVPMRGVLSLFPFSVI*THGRGCQYLALHRFYLFMLSLLWVVGVLVLYLCSEFLGLIFTN 93
+ P VLS+FP +VI + L++ + +LS+ VL + + LG+ T
Sbjct: 813 IFPAAVVLSIFPTAVILSTFPTAVVLSIFSAAV-VLSIFPAAVVLGTFPAAVVLGIFPTA 871
Query: 92 VVV 84
VV+
Sbjct: 872 VVL 874
Score = 32.7 bits (73), Expect = 6.4
Identities = 34/123 (27%), Positives = 57/123 (45%), Gaps = 3/123 (2%)
Frame = -3
Query: 443 TWVDLLLFPSALLFSALNLVVLDFV*PF*AIISLFSC---LQNFPLLS*FIYFCSFCKVS 273
T V L +FP+A++ S V+ + P ++S F L FP F + +S
Sbjct: 375 TAVVLSIFPAAVVLSIFPTAVVLSIFPAAVVLSTFPAAVILSTFPTAVVLSTFPTAVVLS 434
Query: 272 VVPMRGVLSLFPFSVI*THGRGCQYLALHRFYLFMLSLLWVVGVLVLYLCSEFLGLIFTN 93
+ P VLS+FP +VI + L++ + +LS+ VL + + LG+ T
Sbjct: 435 IFPAAVVLSIFPTAVILSTFPTAVVLSIFSAAV-VLSIFPAAVVLGTFPAAVVLGIFPTA 493
Query: 92 VVV 84
VV+
Sbjct: 494 VVL 496
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 717,371,362
Number of Sequences: 1393205
Number of extensions: 16267613
Number of successful extensions: 38385
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38321
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
