KMC000445A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC000445A_C01 KMC000445A_c01
aagagaaacttgcacattctgcaggtacaaaataaaaattcaaaccttaaaccagtgaag
tcctaaaaggcacgacttgcCAGCCCAATCATAATGTCCAAGCAAAATGTGGATAGACAT
AGGATAGCACATGGACAAGGCCCCCACATATCCTAATCTCCCCCATAAACCTAACAATAA
CATGCATCATTATTATAACATGCTTGAAGGAGAAGGGAGTTnGTGCATCCAATAATTCCC
ATGTGGGACTAAGCTGGCAAACATTACAAGATGGAGCAAACAATCACAGTTGTATTTATA
CGAACAACTCATTCTTGCCTAAAGGCGTGCTTGTTGTGTTCACAAGGAAAATTGCATCTT
TAGAAAAAGAATAAAATAATATACATGCCTACCCATTTTAATCAAGCAATTAAATATTGA
AGACGAACAGCCTAGCATCAGAGCAACCAGAAATGAAATCAAAATACGGAGCAGAGAGAA
ACAGAGTAGAGCAGGAGCTAATTTACAATGAGCATGATCATCATCAATGCTACCTTCCCT
CCCTCCCCCACCAGGACATGTAGCGCAAGCAAAACTCTCCAGAGGTCAGAACCAGTTTGA
ACATGGTGGCATGGAGACTGATGCGATTCCAACCTTCAATCCGACTTAGGTGCTGACTGC
CGGAACCTGATTCACGGTATCAAAGTTGTTCGCAGGTTTTGGCCTCCACTCAGTTCTGCC
CCTCACAATTTCAGCGCCTTCTTCAAGTCGAAGCAAATGCTTGCACTCAACTTGTCCGCT
GTGGGCTAGATTGTCCACATCAGCCCCAGATACGGCAGTGAGAGAC


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000445A_C01 KMC000445A_c01
         (826 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB51525.1| acyl-ACP thioesterase [Garcinia mangostana]             84  2e-15
pir||A59034 oleoyl-[acyl-carrier-protein] hydrolase (EC 3.1.2.14...    68  1e-10
emb|CAA85388.1| acyl-(acyl carrier protein) thioesterase [Arabid...    68  1e-10
ref|NP_172327.1| acyl-(acyl carrier protein) thioesterase, putat...    68  1e-10
sp|Q9SQI3|FATB_GOSHI Myristoyl-acyl carrier protein thioesterase...    65  9e-10

>gb|AAB51525.1| acyl-ACP thioesterase [Garcinia mangostana]
          Length = 406

 Score = 84.3 bits (207), Expect = 2e-15
 Identities = 38/55 (69%), Positives = 45/55 (81%)
 Frame = -2

Query: 825 SLTAVSGADVDNLAHSGQVECKHLLRLEEGAEIVRGRTEWRPKPANNFDTVNQVP 661
           SLTAVSG  V +L H+G VEC+H+LRLE+GAEIVRGRTEWRPK  NNF  + Q+P
Sbjct: 348 SLTAVSGGGVGDLGHAGNVECQHVLRLEDGAEIVRGRTEWRPKYINNFSIMGQIP 402

>pir||A59034 oleoyl-[acyl-carrier-protein] hydrolase (EC 3.1.2.14) precursor
           (clone TE 1-1) - Arabidopsis thaliana
           gi|634003|emb|CAA85387.1| acyl-(acyl carrier protein)
           thioesterase [Arabidopsis thaliana]
          Length = 412

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 30/43 (69%), Positives = 37/43 (85%)
 Frame = -2

Query: 825 SLTAVSGADVDNLAHSGQVECKHLLRLEEGAEIVRGRTEWRPK 697
           SLTAV+G D+ NLA +G VEC+HLLRL++GAE+VRGRTEW  K
Sbjct: 360 SLTAVTGCDIGNLATAGDVECQHLLRLQDGAEVVRGRTEWSSK 402

>emb|CAA85388.1| acyl-(acyl carrier protein) thioesterase [Arabidopsis thaliana]
          Length = 412

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 30/43 (69%), Positives = 37/43 (85%)
 Frame = -2

Query: 825 SLTAVSGADVDNLAHSGQVECKHLLRLEEGAEIVRGRTEWRPK 697
           SLTAV+G D+ NLA +G VEC+HLLRL++GAE+VRGRTEW  K
Sbjct: 360 SLTAVTGCDIGNLATAGDVECQHLLRLQDGAEVVRGRTEWSSK 402

>ref|NP_172327.1| acyl-(acyl carrier protein) thioesterase, putative; protein id:
           At1g08510.1, supported by cDNA: gi_15451197, supported
           by cDNA: gi_16648914, supported by cDNA: gi_17978738
           [Arabidopsis thaliana]
           gi|6664317|gb|AAF22899.1|AC006932_16 T27G7.19
           [Arabidopsis thaliana] gi|15451198|gb|AAK96870.1|
           putative oleoyl-[acyl-carrier-protein [Arabidopsis
           thaliana] gi|16648915|gb|AAL24309.1| putative
           oleoyl-[acyl-carrier-protein [Arabidopsis thaliana]
           gi|17978739|gb|AAL47363.1| putative
           oleoyl-[acyl-carrier-protein [Arabidopsis thaliana]
          Length = 412

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 30/43 (69%), Positives = 37/43 (85%)
 Frame = -2

Query: 825 SLTAVSGADVDNLAHSGQVECKHLLRLEEGAEIVRGRTEWRPK 697
           SLTAV+G D+ NLA +G VEC+HLLRL++GAE+VRGRTEW  K
Sbjct: 360 SLTAVTGCDIGNLATAGDVECQHLLRLQDGAEVVRGRTEWSSK 402

>sp|Q9SQI3|FATB_GOSHI Myristoyl-acyl carrier protein thioesterase, chloroplast precursor
           (16:0-acyl-carrier protein thioesterase) (16:0-ACP
           thioesterase) (Acyl-[acyl-carrier protein] hydrolase)
           (PATE) gi|6048397|gb|AAF02215.1|AF076535_1
           palmitoyl-acyl carrier protein thioesterase [Gossypium
           hirsutum]
          Length = 413

 Score = 65.5 bits (158), Expect = 9e-10
 Identities = 29/56 (51%), Positives = 41/56 (72%)
 Frame = -2

Query: 825 SLTAVSGADVDNLAHSGQVECKHLLRLEEGAEIVRGRTEWRPKPANNFDTVNQVPA 658
           SLT VS ++ +N  + G+  C+HLLRL++GAEIVRGRT WRPK A +   ++Q+ A
Sbjct: 355 SLTTVSDSNTENAVNVGEFNCQHLLRLDDGAEIVRGRTRWRPKHAKSSANMDQITA 410

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 745,524,939
Number of Sequences: 1393205
Number of extensions: 16964669
Number of successful extensions: 48503
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 46525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48446
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42857050626
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GENLf016h06 BP063239 1 495
2 MPD030c05_f AV772040 267 762
3 MWM236d09_f AV768337 273 828
4 SPDL068a06_f BP056198 294 794




Lotus japonicus
Kazusa DNA Research Institute