Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000442A_C01 KMC000442A_c01
(881 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187650.1| hypothetical protein; protein id: At3g10390.1 [... 62 9e-09
ref|NP_057165.2| palladin; CGI-151 protein [Homo sapiens] gi|184... 36 0.88
dbj|BAC04796.1| unnamed protein product [Homo sapiens] 36 0.88
ref|NP_635181.1| putative 6-aminohexanoate-dimer hydrolase [Meth... 35 1.5
ref|NP_796900.1| phosphoenolpyruvate-protein phosphotransferase ... 34 3.3
>ref|NP_187650.1| hypothetical protein; protein id: At3g10390.1 [Arabidopsis
thaliana] gi|12322798|gb|AAG51395.1|AC011560_27
hypothetical protein; 118064-115538 [Arabidopsis
thaliana]
Length = 789
Score = 62.4 bits (150), Expect = 9e-09
Identities = 34/50 (68%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = -2
Query: 880 RLNFLCEKLGVRLVGRKGLGMNADSVIASIKAERGNRK-PVSTSMTLKPG 734
RL +LCE LGV+LVGRKGLG+ ADSVIASIKAER RK P S++ K G
Sbjct: 740 RLYYLCETLGVKLVGRKGLGVGADSVIASIKAERTGRKLPSSSTSGTKSG 789
>ref|NP_057165.2| palladin; CGI-151 protein [Homo sapiens]
gi|18448935|gb|AAL69964.1|AF464873_1 myoneurin [Homo
sapiens]
Length = 1106
Score = 35.8 bits (81), Expect = 0.88
Identities = 16/35 (45%), Positives = 20/35 (56%), Gaps = 2/35 (5%)
Frame = +1
Query: 247 IPSPSIFHCYPNNQDLSFPFN--FHPPPFSIVFLP 345
+ SP HCY +NQDL+ P N HP P S + P
Sbjct: 234 VKSPGARHCYQDNQDLAVPHNRKSHPQPHSALHFP 268
>dbj|BAC04796.1| unnamed protein product [Homo sapiens]
Length = 410
Score = 35.8 bits (81), Expect = 0.88
Identities = 16/35 (45%), Positives = 20/35 (56%), Gaps = 2/35 (5%)
Frame = +1
Query: 247 IPSPSIFHCYPNNQDLSFPFN--FHPPPFSIVFLP 345
+ SP HCY +NQDL+ P N HP P S + P
Sbjct: 111 VKSPGARHCYQDNQDLAVPHNRKSHPQPHSALHFP 145
>ref|NP_635181.1| putative 6-aminohexanoate-dimer hydrolase [Methanosarcina mazei
Goe1] gi|20907834|gb|AAM32853.1| putative
6-aminohexanoate-dimer hydrolase [Methanosarcina mazei
Goe1]
Length = 521
Score = 35.0 bits (79), Expect = 1.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = -3
Query: 336 NNGKWRGMKV---EWKTQVLVVWITMENGGGWNTYTWVPPKCFPHKY---GRKTE 190
NNG+W G ++ EW ++ ++ME G+ WVP P +Y GR T+
Sbjct: 261 NNGEWDGKQIVPAEWVSESTREQVSMEEDEGYGYQWWVPDDDLPERYDARGRGTQ 315
>ref|NP_796900.1| phosphoenolpyruvate-protein phosphotransferase [Vibrio
parahaemolyticus RIMD 2210633]
gi|28805504|dbj|BAC58784.1| phosphoenolpyruvate-protein
phosphotransferase [Vibrio parahaemolyticus]
Length = 748
Score = 33.9 bits (76), Expect = 3.3
Identities = 27/83 (32%), Positives = 41/83 (48%), Gaps = 2/83 (2%)
Frame = +3
Query: 123 CTIINICET*GVIGLLIKKGLLFQF-SVHTCVENILVGPMCKYSIPLHFPLLSKQPRLEF 299
CTI E + L+ +GL+F+ S+H LVG + + + PL+ SK P +F
Sbjct: 38 CTIYLANEEMQRLELMATQGLIFEGDSIHINFNEGLVGLVKRSAEPLNLAEASKHPEFKF 97
Query: 300 SIQLSSPSIFHCFPST-CFHAKQ 365
QL ++H F +T H KQ
Sbjct: 98 FPQLGE-QVYHSFLATPIIHRKQ 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 774,829,448
Number of Sequences: 1393205
Number of extensions: 17722425
Number of successful extensions: 43301
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 41235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43287
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47660818527
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
